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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATCTTGGATGGTTCCCGCGTGGAAAAATGGCTGGCCCTTTTCAGGATGTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtataattgtattactaccctttttcctccaatcttcggtctattaacaatgcaagtagcgcctatgacatgagtgctgatctgtgcgataccg...

Basic information

species Oryza sativa
transcript LOC_Os09g24540.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g24540.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G048277_T03 (Zea mays), 5'ss of exon 3
GAGATCTTGGATGGTTCCCGCGTGGAAAAATGGCTGGCCCTTTTCAGGATGTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtataat--tgtattactaccctttttcctccaatcttcggtctattaacaatgcaagtagcgcctatgacatgagtgctg-atctgtgcgataccg
|||||||||| |||||||||||||| || |||||||| ||||| ||||| ||||| || | |||||||| |||| ||  |||||||||||| ||||| |||||||  | | |   ||| || || || || |||  | | |    |    ||   | |||  |  ||  | ||| |    | ||||| || | | |  |    
GAGATCTTGGTTGGTTCCCGCGTGGCAAGATGGCTGGTCCTTTCCAGGAGGTTGCTTTCAACACACCTGAGGGAACTGTTAGCGCACCATTCAAGTCCACgtatgcctttcacactgtttttcttccattgttcgcctattgaatgtatcatagcccatggcacaagtccttatcattgcactgctgcatttttcctgtg---

upper sequence: LOC_Os09g24540.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA04G33180.2 (Glycine max), 5'ss of exon 4
GAGATCTTGGATGGTTCCCGCGTGGAAAAATGGCTGGCCCTTTTCAGGATGTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtataattgtattactaccctttttcct--------ccaatcttcggtctattaacaatgcaagtagcgcctatgacatgagtgctgatctgtgcgataccg
|||| ||||||||||| || || ||||| |||||||| || |||||||||||||| || | ||||||||| ||||||||||| || || || || ||||||||| | | |     | |||       |||||||        ||  |   |  ||| ||  ||||  | | | | |||   | |||  ||||    ||   ||| | |
GAGACCTTGGATGGTTTCCCCGAGGAAAGATGGCTGGGCCATTTCAGGATGTTGCCTTCAACACACCTGTTGGAGCTACTAGTGCTCCTTTCAAATCAACgtatttctcttgcactcttaacttttattttcctgattagcacctgtgccccttctcttctcaatttaggca-cacctgcta-atgtttgcttggatg-atgatgcag

upper sequence: LOC_Os09g24540.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA06G21080.1 (Glycine max), 5'ss of exon 4
GAGATCTTGGATGGTTCCCGCGTGGAAAAATGGCTGGCCCTTTTCAGGATGTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtataattgtattactaccctttttcct--------ccaatcttcggtctattaacaatgcaagtagcgcctatgacatgagtgctgatctgtgcgataccg
|||| ||||||||||| || || ||||| |||||||| || |||||||| ||||| || | ||||||||| ||||||||||| || || || || || |||||| | | |  |  | |||       |||||||        ||  |   |  ||| ||    ||  | | ||  |   | |  |  ||   |||      ||| | |
GAGACCTTGGATGGTTTCCCCGAGGAAAGATGGCTGGGCCATTTCAGGAAGTTGCCTTCAACACACCTGTTGGAGCTACTAGTGCTCCTTTCAAATCGACgtatttctcttgtactcttaacttttattttcctgattagcacctgtgccccttctcttcttcatttaggcagacctgctaatgtttgtttggatgatgatgatgcag

upper sequence: LOC_Os09g24540.1 (Oryza sativa), 5'ss of exon 3
lower sequence: AT1G26550.1 (Arabidopsis thaliana), 5'ss of exon 4
GAGATCTTGGATGGTTCCCGCGTGGAAAAATGGCTGGCCCTTTTCAGGATGTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtataattgtattactaccctttttcctccaatcttcggtctattaacaat-gcaagtagcgcctatgacatgagtgctgatctgtgcgataccg
||||||||||||||||||| || ||||| ||||| || || || || ||||| || ||||  |||||||| ||||  || || ||||| || || |||||||||||  | |||   ||  || |  | ||  || | ||||    | |||    | | |    |   |  | | |  || ||| | ||    |        
GAGATCTTGGATGGTTCCCTCGAGGAAAGATGGCAGGTCCATTCCAAGATGTCGCCTTTAATACACCTGTTGGAGTCACCAGTGCACCCTTCAAATCAACgtatgtcca-aatccgatctcttctttcttctcttctatctg-aatttatctttattagtggatgatgaatgtaat-tgcgtggtaattgcag--------

upper sequence: LOC_Os09g24540.1 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv17s0000g06430.t01 (Vitis vinifera), 5'ss of exon 4
GAGATCTTGGATGGTTCCCGCGTGGAAAAATGGCTGGCCCTTTTCAGGATGTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtataattgta-----ttactaccctttttcctccaat-------cttcggtctattaacaatgc--aagtagcgcctatgacatga----gtgctgatctgtgcgataccg
| || ||||||||||| |||||||| || |||||||| || |||||||||||||| || ||||||  | | ||||| || || |||||||| || ||||||||||  |  || | |      ||  ||  ||  ||     |||       ||   |  | |||  | | |    |||||  | |  |  | |     |  || | |     || | |
GTGACCTTGGATGGTTTCCGCGTGGCAAGATGGCTGGTCCATTTCAGGATGTTGCCTTCAGCACAGTTATTGGAGCCACCAGTGCACCATTCAAATCAACgtatggattcaaatttgggtggtttttatgctcgttgagttaattctgtatctctagattcttagtactactcgggtagcttcaactagctaaccttattttgcttttgatcatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88992815|gb|CI035777.1|CI035777
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|86421356|gb|CI057345.1|CI057345
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|87024987|gb|CI263495.1|CI263495
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|11565000|gb|AU165636.1|AU165636
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|88216000|gb|CI215849.1|CI215849
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|86597485|gb|CI282609.1|CI282609
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|88988151|gb|CI036121.1|CI036121
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|88208011|gb|CI207860.1|CI207860
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|88533364|gb|CI460916.1|CI460916
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|88851359|gb|CI404411.1|CI404411
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|87031877|gb|CI268106.1|CI268106
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|87032537|gb|CI266177.1|CI266177
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|86523801|gb|CI164007.1|CI164007
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|88253391|gb|CI352017.1|CI352017
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|9865821|gb|AU101571.1|AU101571
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|8955548|gb|BE229354.1|BE229354
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTBAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|88957370|gb|CI095311.1|CI095311
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|89162824|gb|CI099714.1|CI099714
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|86531612|gb|CI171818.1|CI171818
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|88322849|gb|CI545555.1|CI545555
EST:     ACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: ACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|8859495|gb|AU096813.1|AU096813
EST:     TGCATTTAGCCACACCCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: TGCATTTAG-CACA-CCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|88225920|gb|CI225836.1|CI225836
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|89198399|gb|CI007459.1|CI007459
EST:     TTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAATA                         GCATGGGTACCACCTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTC
genomic: TTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAA-Cgtatgtgtat ... ttacattcagGCATGGGTACCA-CTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTC
EST: gi|15858372|gb|BI811184.1|BI811184
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|88974771|gb|CI023067.1|CI023067
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|87007275|gb|CI278946.1|CI278946
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|88210680|gb|CI210529.1|CI210529
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|15847441|gb|BI795717.1|BI795717
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|88996285|gb|CI037576.1|CI037576
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|88253353|gb|CI351979.1|CI351979
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|86511485|gb|CI154118.1|CI154118
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|88539647|gb|CI469621.1|CI469621
EST:     NTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|88240787|gb|CI239949.1|CI239949
EST:     GTTGCATTCAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|88988530|gb|CI037766.1|CI037766
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|88478133|gb|CI415404.1|CI415404
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|86598623|gb|CI355240.1|CI355240
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCGGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|15846799|gb|BI795075.1|BI795075
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|88213693|gb|CI213542.1|CI213542
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|88207346|gb|CI207195.1|CI207195
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|88512289|gb|CI439795.1|CI439795
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|86529352|gb|CI169558.1|CI169558
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|88214090|gb|CI213939.1|CI213939
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|117222380|gb|CT845828.1|CT845828
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|87027147|gb|CI278179.1|CI278179
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|88212503|gb|CI212143.1|CI212143
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|86897009|gb|CI317442.1|CI317442
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|88255251|gb|CI354075.1|CI354075
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|88524597|gb|CI453532.1|CI453532
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|88409054|gb|CI556762.1|CI556762
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|86529398|gb|CI169604.1|CI169604
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|88850335|gb|CI091828.1|CI091828
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|87031863|gb|CI272564.1|CI272564
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|8857983|gb|AU095301.1|AU095301
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGANGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|14191568|gb|AU183779.1|AU183779
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCNCCATTTAAGTCAAC                         GCATGGGTACCNCTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTNTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|86602114|gb|CI260584.1|CI260584
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|87019601|gb|CI282102.1|CI282102
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|87028951|gb|CI351254.1|CI351254
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|88556054|gb|CI486359.1|CI486359
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|88261594|gb|CI365170.1|CI365170
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|3061265|gb|C91897.1|C91897
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|88428598|gb|CI553120.1|CI553120
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|58693353|gb|CK082040.1|CK082040
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|88549741|gb|CI479653.1|CI479653
EST:     TTGCATTTAGCACACCTGTGGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCATTCTG
genomic: TTGCATTTAGCACACCTGT-GGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
EST: gi|88997769|gb|CI390331.1|CI390331
EST:     GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAAC                         GCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG
genomic: GTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 75 (downstream exon)
Score: 55

GAGATCTTGGATGGTTCCCGCGTGGAAAAATGGCTGGCCCTTTTCAGGATGTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtat ... ttacattcagGCATGGGTACCACTTCATCCTCTGTGAAGGAAGGAAGAACTGATCAGTCTGCTTCAGGTTGGAACAGAAGCACCTCAGTCTATACAAGATGCAGATGCCT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGATCTTGGATGGTTCCCGCGTGGAAAAATGGCTGGCCCTTTTCAGGATGTTGCATTTAGCACACCTGTGGGAGCTACTAGCGCACCATTTAAGTCAACgtatgtgtataattgtattactaccctttttcctccaatcttcggtctattaacaatgcaagtagcgcctatgacatgagtgctgatctgtgcgataccg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcctcc