1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTGGATGTATACCTTCTTGCACAAAAGTGGAGAGGCCTGCTCAAGAAGGCACGCATGAAGCAGCTCCAACCAGACGAATACAGTTCAGgtacagaatatgttgtattgtgattggcacttggttttttatggaaaccacgcttacctgaagtttgatgatttgtag
species | Oryza sativa |
transcript | LOC_Os09g24320.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCTCAAGAAGGCACGCATGAAGCAGCTCCAACCAGACGAATACAGTTCAG GGACTTTTACGCTGTCTAATTTGGGTATGTTTGGTGTGGATAGATTCGATGEST: gi|88243658|gb|CI244055.1|CI244055
genomic: GCTCAAGAAGGCACGCATGAAGCAGCTCCAACCAGACGAATACAGTTCAGgtacagaata ... tgatttgtagGGACTTTTACGCTGTCTAATTTGGGTATGTTTGGTGTGGATAGATTCGATG
EST: GCTCAAGAAGGCACGCATGAAGCAGCTCCAACCAGACGAATACAGTTCAG GGACTTTTACGCTGTCTAATTTGGGTATGTTTGGTGTGGATAGATTCGATGEST: gi|86502075|gb|CI144708.1|CI144708
genomic: GCTCAAGAAGGCACGCATGAAGCAGCTCCAACCAGACGAATACAGTTCAGgtacagaata ... tgatttgtagGGACTTTTACGCTGTCTAATTTGGGTATGTTTGGTGTGGATAGATTCGATG
EST: GCTCAAGAAGGCACGCATGAAGCAGCTCCAACCAGACGAATACAGTTCAG GGACTTTTACGCTGTCTAATTTGGGTATGTTTGGTGTGGATAGATTCGATGEST: gi|86496531|gb|CI139164.1|CI139164
genomic: GCTCAAGAAGGCACGCATGAAGCAGCTCCAACCAGACGAATACAGTTCAGgtacagaata ... tgatttgtagGGACTTTTACGCTGTCTAATTTGGGTATGTTTGGTGTGGATAGATTCGATG
EST: GCTCAAGAAGGCACGCATGAAGCAGCTCCAACCAGACGAATACAGTTCAG GGACTTTTACGCTGTCTAATTTGGGTATGTTTGGTGTGGATAGATTCGATGEST: gi|58590474|gb|CF988782.1|CF988782
genomic: GCTCAAGAAGGCACGCATGAAGCAGCTCCAACCAGACGAATACAGTTCAGgtacagaata ... tgatttgtagGGACTTTTACGCTGTCTAATTTGGGTATGTTTGGTGTGGATAGATTCGATG
EST: GCTCAAGAAGGCACGCATGAAGCAGCTCCAACCAGACGAATACAGTTCAG GGAC-TTGGCGCTGTCTAATTTGGGTATGTTTGGTGTGGATAGATTCGATGEST: gi|86504848|gb|CI147481.1|CI147481
genomic: GCTCAAGAAGGCACGCATGAAGCAGCTCCAACCAGACGAATACAGTTCAGgtacagaata ... tgatttgtagGGACTTTTACGCTGTCTAATTTGGGTATGTTTGGTGTGGATAGATTCGATG
EST: GCTCAAGAAGGCACGCATGAAGCAGCTCCAACCAGACGAATACAGTTCAG GGACTTTTACGCTGTCTAATTTGGGTATGTTTGGTGTGGATAGATTCGATGEST: gi|29679375|gb|CB675650.1|CB675650
genomic: GCTCAAGAAGGCACGCATGAAGCAGCTCCAACCAGACGAATACAGTTCAGgtacagaata ... tgatttgtagGGACTTTTACGCTGTCTAATTTGGGTATGTTTGGTGTGGATAGATTCGATG
EST: GCTCAAGAAGGCACGCATGAAGCAGCTCCAACCAGACGAATACAGTTCAG GGACTTTTACGCTGTCTAATTTGGGTATGTTTGGTGTGGATAGATTCGATGEST: gi|29679373|gb|CB675648.1|CB675648
genomic: GCTCAAGAAGGCACGCATGAAGCAGCTCCAACCAGACGAATACAGTTCAGgtacagaata ... tgatttgtagGGACTTTTACGCTGTCTAATTTGGGTATGTTTGGTGTGGATAGATTCGATG
EST: GCTCAAGAAGGCACGCATGAAGCAGCTCCAACCAGACGAATACAGTTCAG GGACTTTTACGCTGTCTAATTTGGGTATGTTTGGTGTGGATAGATTCGATGEST: gi|89168912|gb|CI020993.1|CI020993
genomic: GCTCAAGAAGGCACGCATGAAGCAGCTCCAACCAGACGAATACAGTTCAGgtacagaata ... tgatttgtagGGACTTTTACGCTGTCTAATTTGGGTATGTTTGGTGTGGATAGATTCGATG
EST: GCTCAAGAAGGCACGCATGAAGCAGCTCCAACCAGACGAATACAGTTCAG GGACTTTTACGCTGTCTAATTTGGGTATGTTTGGTGTGGATAGATTCGATGEST: gi|86498936|gb|CI141569.1|CI141569
genomic: GCTCAAGAAGGCACGCATGAAGCAGCTCCAACCAGACGAATACAGTTCAGgtacagaata ... tgatttgtagGGACTTTTACGCTGTCTAATTTGGGTATGTTTGGTGTGGATAGATTCGATG
EST: GCTCAAGAAGGCACGCATGAAGCAGCTCCAACCAGACGAATACAGTTCAG GGACTTTTACGCTGTCTAATTTGGGTATGTTTGGTGTGGATAGATTCGATGEST: gi|27547652|gb|CA767394.2|CA767394
genomic: GCTCAAGAAGGCACGCATGAAGCAGCTCCAACCAGACGAATACAGTTCAGgtacagaata ... tgatttgtagGGACTTTTACGCTGTCTAATTTGGGTATGTTTGGTGTGGATAGATTCGATG
EST: GCTCAAGAAGGCACGCATGAAGCAGCTCCAACCAGACGAATACAGTTCAG GGACTTTTACGCTGTCTAATTTGGGTATGTTTGGTGTGGATAGATTCGATGEST: gi|88249651|gb|CI249500.1|CI249500
genomic: GCTCAAGAAGGCACGCATGAAGCAGCTCCAACCAGACGAATACAGTTCAGgtacagaata ... tgatttgtagGGACTTTTACGCTGTCTAATTTGGGTATGTTTGGTGTGGATAGATTCGATG
EST: GCTCAAGAAGGCACGCATGAAGCAGCTCCAACCAGACGAATACAGTTCAG GGACTTTTACGCTGTCTAATTTGGGTATGTTTGGTGTGGATAGATTCGATG
genomic: GCTCAAGAAGGCACGCATGAAGCAGCTCCAACCAGACGAATACAGTTCAGgtacagaata ... tgatttgtagGGACTTTTACGCTGTCTAATTTGGGTATGTTTGGTGTGGATAGATTCGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGATGTATACCTTCTTGCACAAAAGTGGAGAGGCCTGCTCAAGAAGGCACGCATGAAGCAGCTCCAACCAGACGAATACAGTTCAGgtacagaatatgttgtattgtgattggcacttggttttttatggaaaccacgcttacctgaagtttgatgatttgtag
- - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC