1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGAACGTGCTACAGCATTTGGCCTTATGAAGATTGATGATGAAGGGAGGATCATTGAATTTGCAGAAAAGCCAAAAGGAGAGAAGTTGAAATCAATGATGgtaattgatgagtcatccgttgagaccatatgcaacctgatctgttgaagcatacatttcagtgattgtctgcatgttttgatcttgcag
species | Oryza sativa |
transcript | LOC_Os09g12660.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCATTGAATTTGCAGAAAAGCCAAAAGGAGAGAAGTTGAAATCAATGATG GTTGACACTACCATACTTGGCCTTGATACTGAGAGGGCAAAGGAATTGCCTEST: gi|86520775|gb|CI160981.1|CI160981
genomic: TCATTGAATTTGCAGAAAAGCCAAAAGGAGAGAAGTTGAAATCAATGATGgtaattgatg ... gatcttgcagGTTGACACTACCATACTTGGCCTTGATACTGAGAGGGCAAAGGAATTGCCT
EST: CCAAAAGGAGAGAAGTTGAAATCAATGATG GTTGACACTACCATACTTGGCCTTGATACTGAGAGGGCAAAGGAATTGCCTEST: gi|58674587|gb|CK063274.1|CK063274
genomic: CCAAAAGGAGAGAAGTTGAAATCAATGATGgtaattgatg ... gatcttgcagGTTGACACTACCATACTTGGCCTTGATACTGAGAGGGCAAAGGAATTGCCT
EST: TCATTGAATTTGCAGAAAAGCCAAAAGGAGAGAAGTTGAAATCAATGATG GTTGACACTACCATACTTGGCCTTGATACTGAGAGGGCAAAGGAATTGCCT
genomic: TCATTGAATTTGCAGAAAAGCCAAAAGGAGAGAAGTTGAAATCAATGATGgtaattgatg ... gatcttgcagGTTGACACTACCATACTTGGCCTTGATACTGAGAGGGCAAAGGAATTGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAACGTGCTACAGCATTTGGCCTTATGAAGATTGATGATGAAGGGAGGATCATTGAATTTGCAGAAAAGCCAAAAGGAGAGAAGTTGAAATCAATGATGgtaattgatgagtcatccgttgagaccatatgcaacctgatctgttgaagcatacatttcagtgattgtctgcatgttttgatcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT