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AGGGCAGCTGCATCAAATCTTGGAAAGTTTGCAGCCACAGTTGAACAGAACTATCTAAAGACAGAAGTCATGTCGATATTTGATGATCTAACCCAAGATGgtaccatgcacctctcacataatattttgtgctatttcatacttctttacattcatgacataatagtctttaataatcctattagtaactaataaaaaac...
species | Oryza sativa |
transcript | LOC_Os09g07510.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTATCTAAAGACAGAAGTCATGTCGATATTTGATGATCTAACCCAAGATG ATCAAGATTCCGTACGCTTGTTGGCAGTTGAAGGCTGTGCTGCTCTTGGGAEST: gi|58672176|gb|CK060862.1|CK060862
genomic: CTATCTAAAGACAGAAGTCATGTCGATATTTGATGATCTAACCCAAGATGgtaccatgca ... ttattaccagATCAAGATTCCGTACGCTTGTTGGCAGTTGAAGGCTGTGCTGCTCTTGGGA
EST: CTATCTAAAGACAGAAGTCATGTCGATATTTGATGATCTAACCCAAGATG ATCAAGATTCCGTACGCTTGTTGGCAGTTGAAGGCTGTGCTGCTCTTGGGAEST: gi|300215769|gb|HO088395.1|HO088395
genomic: CTATCTAAAGACAGAAGTCATGTCGATATTTGATGATCTAACCCAAGATGgtaccatgca ... ttattaccagATCAAGATTCCGTACGCTTGTTGGCAGTTGAAGGCTGTGCTGCTCTTGGGA
EST: CTATCTAAAGACAGAAGTCATGTCGATATTTGATGATCTAACCCAAGATG ATCAAGATTCCGTACGCTTGTTGGCAGTTGAAGGCTGTGCTGCTCTTGGGAEST: gi|29658915|gb|CB655190.1|CB655190
genomic: CTATCTAAAGACAGAAGTCATGTCGATATTTGATGATCTAACCCAAGATGgtaccatgca ... ttattaccagATCAAGATTCCGTACGCTTGTTGGCAGTTGAAGGCTGTGCTGCTCTTGGGA
EST: CTATCTAAAGACAGAAGTCATGTCGATATTTGATGATCTAACCCAAGATG ATCAAGATTCCGTACGCTTGTTGGCAGTTGAAGGCTGTGCTGCTCTTGGGAEST: gi|313081057|gb|HO213643.1|HO213643
genomic: CTATCTAAAGACAGAAGTCATGTCGATATTTGATGATCTAACCCAAGATGgtaccatgca ... ttattaccagATCAAGATTCCGTACGCTTGTTGGCAGTTGAAGGCTGTGCTGCTCTTGGGA
EST: CTATCTAAAGACAGAAGTCATGTCGATATTTGATGATCTAACCCAAGATG ATCAAGATTCCGT
genomic: CTATCTAAAGACAGAAGTCATGTCGATATTTGATGATCTAACCCAAGATGgtaccatgca ... ttattaccagATCAAGATTCCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGCAGCTGCATCAAATCTTGGAAAGTTTGCAGCCACAGTTGAACAGAACTATCTAAAGACAGAAGTCATGTCGATATTTGATGATCTAACCCAAGATGgtaccatgcacctctcacataatattttgtgctatttcatacttctttacattcatgacataatagtctttaataatcctattagtaactaataaaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaaa