1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGACACTATTGCAGGGAAGTATGTTGGGAACCGCCCTATTAAATTGCGTAAAAGCAATTGGAAAGAGAGGACCGATGTTGATGCTCTAGAAAGACAGAAGgtttgtgtcatttttctttctttgatccagtgtatcgctcccttcgtatgcttacctttgttagtacatttgtctttcag
species | Oryza sativa |
transcript | LOC_Os08g45240.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAAGCAATTGGAAAGAGAGGACCGATGTTGATGCTCTAGAAAGACAGAAG AATCACATCCAGAAGAAACCTAAAATGCCCAAGAAAAGTATCCTTCACAAGEST: gi|40488236|gb|BX898806.1|BX898806
genomic: AAAGCAATTGGAAAGAGAGGACCGATGTTGATGCTCTAGAAAGACAGAAGgtttgtgtca ... tgtctttcagAATCACATCCAGAAGAAACCTAAAATGCCCAAGAAAAGTATCCTTCACAAG
EST: AAGCAATTGGAAAGAGAGGACCGATGTTGATGCTCTAGAAAGACAGAAG AATCACATCCAGAAGAAACCTAAAATGCCCAAGAAAAGTATCCTTCACAAGEST: gi|89184670|gb|CI007095.1|CI007095
genomic: AAGCAATTGGAAAGAGAGGACCGATGTTGATGCTCTAGAAAGACAGAAGgtttgtgtca ... tgtctttcagAATCACATCCAGAAGAAACCTAAAATGCCCAAGAAAAGTATCCTTCACAAG
EST: AAAGCAATTGGAAAGAGAGGACCGATGTTGATGCTCTAGAAAGACAGAAG AATCACATCCAGAAGAAACCTAAAATGCCCAAGAAAAGTATCCTTCACAAGEST: gi|89173728|gb|CI041621.1|CI041621
genomic: AAAGCAATTGGAAAGAGAGGACCGATGTTGATGCTCTAGAAAGACAGAAGgtttgtgtca ... tgtctttcagAATCACATCCAGAAGAAACCTAAAATGCCCAAGAAAAGTATCCTTCACAAG
EST: AAAGCAATTGGAAAGAGAGGACCGATGTTGATGCTCTAGAAAGACAGAAG AATCACATCCAGAAGAAACCTAAAATGCCCAAGAAAAGTATCCTTCACAAG
genomic: AAAGCAATTGGAAAGAGAGGACCGATGTTGATGCTCTAGAAAGACAGAAGgtttgtgtca ... tgtctttcagAATCACATCCAGAAGAAACCTAAAATGCCCAAGAAAAGTATCCTTCACAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACACTATTGCAGGGAAGTATGTTGGGAACCGCCCTATTAAATTGCGTAAAAGCAATTGGAAAGAGAGGACCGATGTTGATGCTCTAGAAAGACAGAAGgtttgtgtcatttttctttctttgatccagtgtatcgctcccttcgtatgcttacctttgttagtacatttgtctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA