1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTGGTTAAGAAGCTTGCCAAGAAGTACCATGCTTTCTTAGCATCAGAGGCCATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattccattttctgacattcttgctttttcttggtgtagttctgaattttaacgagtgcatgctagtttttcttggtgtagttttgaattctaat...
species | Oryza sativa |
transcript | LOC_Os08g44450.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|58596330|gb|CK006858.1|CK006858
genomic: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAAEST: gi|33800481|gb|CF326110.1|CF326110
genomic: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAA
EST: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|88239937|gb|CI239099.1|CI239099
genomic: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|29637359|gb|CB642368.1|CB642368
genomic: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|87024927|gb|CI261436.1|CI261436
genomic: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|58604026|gb|CK014554.1|CK014554
genomic: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|58679944|gb|CK068631.1|CK068631
genomic: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|88217543|gb|CI217392.1|CI217392
genomic: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|33664248|gb|CF295215.1|CF295215
genomic: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|38474392|gb|CF958524.1|CF958524
genomic: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCEST: gi|7332384|gb|AU085730.1|AU085730
genomic: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATC
EST: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|86512579|gb|CI155212.1|CI155212
genomic: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|218495789|gb|FG952983.1|FG952983
genomic: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|218502837|gb|FG950277.1|FG950277
genomic: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: ATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCEST: gi|86866953|gb|CI343813.1|CI343813
genomic: ATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAA-GGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTC
EST: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|86532320|gb|CI172526.1|CI172526
genomic: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|89195029|gb|CI051142.1|CI051142
genomic: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|86507716|gb|CI150349.1|CI150349
genomic: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATTCCTCGTCTCGTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|38483017|gb|CF966819.1|CF966819
genomic: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|33811047|gb|CF331414.1|CF331414
genomic: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|33821233|gb|CF336425.1|CF336425
genomic: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: GGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|58594107|gb|CF992415.1|CF992415
genomic: GGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|29687000|gb|CB683275.1|CB683275
genomic: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|58588784|gb|CF987092.1|CF987092
genomic: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|25807648|gb|CA763609.1|CA763609
genomic: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|86822948|gb|CI251956.1|CI251956
genomic: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGTATCCAAGGTCAEST: gi|218497208|gb|FG946438.1|FG946438
genomic: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCEST: gi|88974536|gb|CI022077.1|CI022077
genomic: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATC
EST: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|86601353|gb|CI251727.1|CI251727
genomic: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|27577252|gb|CA999946.1|CA999946
genomic: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|86416466|gb|CI030477.1|CI030477
genomic: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|58595844|gb|CK006372.1|CK006372
genomic: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|27554610|gb|CA998510.1|CA998510
genomic: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAEST: gi|58694951|gb|CK083638.1|CK083638
genomic: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
EST: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAG GCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
genomic: CATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattc ... cacactgcagGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGGTTAAGAAGCTTGCCAAGAAGTACCATGCTTTCTTAGCATCAGAGGCCATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCAACAAGGCAGgcaagtattccattttctgacattcttgctttttcttggtgtagttctgaattttaacgagtgcatgctagtttttcttggtgtagttttgaattctaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT