1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTCGGAAGGTTAAGGAGTCATCAAAGATAGGGCAGTGTCCTCGACCAGAAAAGCCTATCGAGATTTACGAGTTTGAAGGgtatatatgcttcatcttttctctctttccataaaagacatgtattgttcagacccaataatcttcttctgggtattctctcatgctatagctaacttaatttgtaccgtccattcaattgttgctgtattaattctgcctcaacttcag
species | Oryza sativa |
transcript | LOC_Os08g44400.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGCAGTGTCCTCGACCAGAAAAGCCTATCGAGATTGTACGAGTTTGAAGG CTGCCCATTCTGCCGAAAGEST: gi|29687876|gb|CB684151.1|CB684151
genomic: GGCAGTGTCCTCGACCAGAAAAGCCTATCGAGATT-TACGAGTTTGAAGGgtatatatgc ... tcaacttcagCTGCCCATTCTGCCGAAAG
EST: GGGCAGTGTCCTCGACCAGAAAAGCCTATCGAGATTTACGAGTTTGAAGG CTGCCCATTCTGCCGAAAGEST: gi|58593409|gb|CF991717.1|CF991717
genomic: GGGCAGTGTCCTCGACCAGAAAAGCCTATCGAGATTTACGAGTTTGAAGGgtatatatgc ... tcaacttcagCTGCCCATTCTGCCGAAAG
EST: GGGCAGTGTCCTCGACCAGAAAAGCCTATCGAGATTTACGAGTTTGAAGG CTGCCCATTCTGCCGAAAGEST: gi|27548923|gb|CA767585.2|CA767585
genomic: GGGCAGTGTCCTCGACCAGAAAAGCCTATCGAGATTTACGAGTTTGAAGGgtatatatgc ... tcaacttcagCTGCCCATTCTGCCGAAAG
EST: CGAGATTTACGAGTTTGAAGG CTGCCCATTCTGCCGAAAG
genomic: CGAGATTTACGAGTTTGAAGGgtatatatgc ... tcaacttcagCTGCCCATTCTGCCGAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGGAAGGTTAAGGAGTCATCAAAGATAGGGCAGTGTCCTCGACCAGAAAAGCCTATCGAGATTTACGAGTTTGAAGGgtatatatgcttcatcttttctctctttccataaaagacatgtattgttcagacccaataatcttcttctgggtattctctcatgctatagctaacttaatttgtaccgtccattcaattgttgctgtattaattctgcctcaacttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG