1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ATAGGGTGTTTGGTCCTGATTCCTCTACAAGGCAGGTCTACGAGGAAGGAGCGAAAGAAGTTGCTCTATCAGTTGTCAGTGGAATCAACTgtaagcaccgaagaaatgacgcaacttcgttgcattgtcgctttgagttttgtgaggtgatgtggggtaactaacatctgcacttgggttggttcttggcag
species | Oryza sativa |
transcript | LOC_Os08g43400.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGAGGAAGGAGCGAAAGAAGTTGCTCTATCAGTTGTCAGTGGAATCAACT CAAGCATATTCGCGTATGGGCAAACAAGCAGTGGCAAGACTTACACGATGAEST: gi|29631858|gb|CB636867.1|CB636867
genomic: CGAGGAAGGAGCGAAAGAAGTTGCTCTATCAGTTGTCAGTGGAATCAACTgtaagcaccg ... ttcttggcagCAAGCATATTCGCGTATGGGCAAACAAGCAGTGGCAAGACTTACACGATGA
EST: CGAGGAAGGAGCGAAAGAAGTTGCTCTATCAGTTGTCAGTGGAATCAACT CAAGCATATTCGCGTATGGGCAAACAAGCAGTGGCAAGACTTACACGATGAEST: gi|29656888|gb|CB653163.1|CB653163
genomic: CGAGGAAGGAGCGAAAGAAGTTGCTCTATCAGTTGTCAGTGGAATCAACTgtaagcaccg ... ttcttggcagCAAGCATATTCGCGTATGGGCAAACAAGCAGTGGCAAGACTTACACGATGA
EST: CGAGGAAGGAGCGAAAGAAGTTGCTCTATCGGATGTCAGTGGAATCAACT CAAGCATATTCGCGTATGGGCAAACAAGCAGTGGCAAGACTTACACGATGA
genomic: CGAGGAAGGAGCGAAAGAAGTTGCTCTATCAGTTGTCAGTGGAATCAACTgtaagcaccg ... ttcttggcagCAAGCATATTCGCGTATGGGCAAACAAGCAGTGGCAAGACTTACACGATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAGGGTGTTTGGTCCTGATTCCTCTACAAGGCAGGTCTACGAGGAAGGAGCGAAAGAAGTTGCTCTATCAGTTGTCAGTGGAATCAACTgtaagcaccgaagaaatgacgcaacttcgttgcattgtcgctttgagttttgtgaggtgatgtggggtaactaacatctgcacttgggttggttcttggcag
- - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA