1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TAATAACTACATCTCCGTTGGTGCCTCTGGAGCTTTGTTTGGCTTACTTGGGTCTATGCTCTCCGAGCTTATTATGAACTGGACTATTTATTCCAACAAGgtcagcagaacagagactgtacctatattgtttactccaattcagttgttccctgcaagtttcagtttgttcactcttgcag
species | Oryza sativa |
transcript | LOC_Os08g43320.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGTCTATGCTCTCCGAGCTTATTATGAACTGGACTATTTATTCCAACAAG GCAGCAGCAATCATAACTCTCCTGTTTATAATTGCAATCAATTTGGCGATCEST: gi|86601819|gb|CI258495.1|CI258495
genomic: GGTCTATGCTCTCCGAGCTTATTATGAACTGGACTATTTATTCCAACAAGgtcagcagaa ... actcttgcagGCAGCGGCAATCATAACTCTCCTGTTTATAATTGCAATCAATTTGGCGATC
EST: AACTGGACTATTTATTCCAACAAG GCAGCGGCAATCATAACTCTCCTGTTTATAATTGCAATCAATTTGGCGATCEST: gi|29655822|gb|CB652097.1|CB652097
genomic: AACTGGACTATTTATTCCAACAAGgtcagcagaa ... actcttgcagGCAGCGGCAATCATAACTCTCCTGTTTATAATTGCAATCAATTTGGCGATC
EST: GGTCTATGCTCTCCGAGCTTATTATGAACTGGACTATTTATTCCAACAAG GCAGCGGCAATCATAACTCTCCTGTTTATAATTGCAATCAATTTGGCGATCEST: gi|29659845|gb|CB656120.1|CB656120
genomic: GGTCTATGCTCTCCGAGCTTATTATGAACTGGACTATTTATTCCAACAAGgtcagcagaa ... actcttgcagGCAGCGGCAATCATAACTCTCCTGTTTATAATTGCAATCAATTTGGCGATC
EST: GGTCTATGCTCTCCGAGCTTATTATGAACTGGACTATTTATTCCAACAAG GCAGCGGCAATCATAACTCTCCTGTTTATAATTGCAATCAATTTGGCGATCEST: gi|29655821|gb|CB652096.1|CB652096
genomic: GGTCTATGCTCTCCGAGCTTATTATGAACTGGACTATTTATTCCAACAAGgtcagcagaa ... actcttgcagGCAGCGGCAATCATAACTCTCCTGTTTATAATTGCAATCAATTTGGCGATC
EST: GGTCTATGCTCTCCGAGCTTATTATGAACTGGACTATTTATTCCAACAAG GCAGCGGCAATCATAACTCTCCTGTTTATAATTGCAATCAATTTGGCGATC
genomic: GGTCTATGCTCTCCGAGCTTATTATGAACTGGACTATTTATTCCAACAAGgtcagcagaa ... actcttgcagGCAGCGGCAATCATAACTCTCCTGTTTATAATTGCAATCAATTTGGCGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAATAACTACATCTCCGTTGGTGCCTCTGGAGCTTTGTTTGGCTTACTTGGGTCTATGCTCTCCGAGCTTATTATGAACTGGACTATTTATTCCAACAAGgtcagcagaacagagactgtacctatattgtttactccaattcagttgttccctgcaagtttcagtttgttcactcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT