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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGATTAGGAGAAGCTTATGATGGAGATATTGCATTTGCAAGCTCACTCGAAACATTTGGGGGAGGCCACAATGACCCTATAAGTGTTGCTTTTGGTGgttagtcatgttattctcctgcatatcttttatctgatgttttcggtgatatttgttttgtttaaatttttcatatgagtatgcaaggtgttttctttat...

Basic information

species Oryza sativa
transcript LOC_Os08g42530.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g42530.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA18G51810.1 (Glycine max), 5'ss of exon 3
GAAGGATTAGGAGAAGCTTATGATGGAGATATTGCATTTGCAAGCTCACTCGAAACATTTGGGGGAGGCCACAATGACCCTATAAGTGTTGCTTTTGGTGgt-tagtcatgttattctcctgcat----atcttttatctgatgttttcggtgatatttgtt--ttgtttaaatttttcatatgagtatgcaaggtgttttctttat
|||||| | || || || ||||||||||||||||||||||||||  |  | ||||| ||||| || || || |||||||| || ||||| |||||||| ||| |  ||   || | |  |    |    ||  || ||   | ||| || ||      || |  ||| |||  |||    | | || || | || ||          
GAAGGACTTGGGGAGGCCTATGATGGAGATATTGCATTTGCAAGTGCCTTGGAAACTTTTGGTGGTGGGCATAATGACCCAATCAGTGTGGCTTTTGGAGgtatgctccccttttacatcaatcttatgatggttgatgaaaggttctctgttcctcctggtagttgattatgtttccatttttagcatcccagatgagc-------

upper sequence: LOC_Os08g42530.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA08G28890.2 (Glycine max), 5'ss of exon 3
GAAGGATTAGGAGAAGCTTATGATGGAGATATTGCATTTGCAAGCTCACTCGAAACATTTGGGGGAGGCCACAATGACCCTATAAGTGTTGCTTTTGGTGgt-tagtcatgttattctcctgcat----atcttttatctgatgttttcggtgatatttgtt--ttgtttaaatttttcatatgagtatgcaaggtgttttctttat
|||||| | || || || ||||||||||||||||||||||||||  |  | ||||| ||||| || || || |||||||| || ||||| |||||||| ||| |  ||   || | |  |   ||    ||  || ||   | ||| || ||      || |  ||| |||  |||    | | || |  | || ||          
GAAGGACTTGGGGAGGCCTATGATGGAGATATTGCATTTGCAAGTGCCTTGGAAACTTTTGGTGGTGGGCATAATGACCCAATCAGTGTGGCTTTTGGAGgtatgctccctttttacatcaatattatgatggttgatgaaaggttctctgttcctcctggtagttgattatgtttccatttttagcaccccagatgagc-------

upper sequence: LOC_Os08g42530.1 (Oryza sativa), 5'ss of exon 3
lower sequence: AT5G13300.1 (Arabidopsis thaliana), 5'ss of exon 3
GAAGGATTAGGAGAAGCTTATGATGGAGATATTGCATTTGCAAGCTCACTCGAAACATTTGGGGGAGGCCACAATGACCCTATAAGTGTTGCTTTTGGTGgttagtcatgttattctcctgcatatcttttatctgatgttttcggtg-atatttgttttgtttaaatttttcatatgagtatgcaaggtgttttctttat---
|||||| |||| || || || ||||| || ||||| || |||||  |||| ||||||||||| |||||||| ||||| || |||||||| |||||||| |||  | |   ||||     || | |       |   || || || ||  ||     |  | |||  | ||||||| ||||  |    ||   ||||  | |   
GAAGGACTAGGCGAGGCATACGATGGGGACATTGCTTTCGCAAGTGCACTTGAAACATTTGGTGGAGGCCATAATGATCCAATAAGTGTGGCTTTTGGAGgtatgaccgattat----atggaaactcgcagtagcatattgtctgtttattcccataatctttgcagttttcatctgagattctttggcactttccattttag