1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GCGTGAAGCATTGAATTCTGCCCTTGATGAGGAGATGTCTGCTGACCCTTCTGTTTTCTTGATGGGAGAAGAGGTTGGAGAATACCAAGGGGCATATAAGgtgagtaatttttattagaccaatgctgtctttggcccattatcatgacataattaatttctgaatactaaatagtaaagcttctctttcctgcaacattttgcag
species | Oryza sativa |
transcript | LOC_Os08g42410.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGGGATGAAGAGGTTGGAGAATACCAAGGGGCATATAAG ATATCGAAGGGTTTGTTAGACAAATATGGCCCTGATAGGGTTCTTGACACAEST: gi|218484233|gb|FG953202.1|FG953202
genomic: TGGGA-GAAGAGGTTGGAGAATACCAAGGGGCATATAAGgtgagtaatt ... cattttgcagATATCGAAGGGTTTGTTAGACAAATATGGCCCTGATAGGGTTCTTGACACA
EST: GGGCATATAAG ATATCGAAGGGTTTGTTAGACAAATATGGCCCTGATAGGGTTCTTGACACA
genomic: GGGCATATAAGgtgagtaatt ... cattttgcagATATCGAAGGGTTTGTTAGACAAATATGGCCCTGATAGGGTTCTTGACACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGTGAAGCATTGAATTCTGCCCTTGATGAGGAGATGTCTGCTGACCCTTCTGTTTTCTTGATGGGAGAAGAGGTTGGAGAATACCAAGGGGCATATAAGgtgagtaatttttattagaccaatgctgtctttggcccattatcatgacataattaatttctgaatactaaatagtaaagcttctctttcctgcaacattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA