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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTGACGCTGTGGTACAGGGCTCCCGAGGTTCTTCTTGGCGCGGCACACTACTCCACTCCGGTTGACATCTGGTCTGTGGGCTGCATTTTTGgtacggtgaactgatattttggccactgtaaattatcatttcttcaggattcatgccttgacattgttgatatatcttgtgcattgcag

Basic information

species Oryza sativa
transcript LOC_Os08g40170.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g40170.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G068193_T02 (Zea mays), 5'ss of exon 3
ATCCTGACGCTGTGGTACAGGGCTCCCGAGGTTCTTCTTGGCGCGGCACACTACTCCACTCCGGTTGACATCTGGTCTGTGGGCTGCATTTTTGgtacggtgaactgatattttggc--cactg-taaattatcatttcttcaggattcatgccttgacattgttgatat----atcttgtgca--ttgcag
|| || || |||||||||||||| |||||| |||| ||||| ||  | ||||||||||| ||||||||||| ||||| || ||||||||||| ||||||||        | |  | |  ||| | | |||    | | ||| || || ||  ||   ||||  |  |||     | || ||| |  ||||||
ATACTTACCCTGTGGTACAGGGCCCCCGAGATTCTGCTTGGAGCCACGCACTACTCCACCCCGGTTGACATATGGTCCGTTGGCTGCATTTTCGgtacggtctcgatgaactcagacaccaccgctcaatgcagagtgctttagaatccacaccgacacatattacatactctaacctggtgtaaattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29663133|gb|CB659408.1|CB659408
EST:     GGCACACTACTCCACTCCGGTTGACATCTGGTCTGTGGGCTGCATTTTTG                         CTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGC
genomic: GGCACACTACTCCACTCCGGTTGACATCTGGTCTGTGGGCTGCATTTTTGgtacggtgaa ... tgcattgcagCTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGC
EST: gi|29663132|gb|CB659407.1|CB659407
EST:     GGCACACTACTCCACTCCGGTTGACATCTGGTCTGTGGGCTGCATTTTTG                         CTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGC
genomic: GGCACACTACTCCACTCCGGTTGACATCTGGTCTGTGGGCTGCATTTTTGgtacggtgaa ... tgcattgcagCTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGC
EST: gi|58604123|gb|CK014651.1|CK014651
EST:     GGCACACTACTCCACTCCGGTTGACATCTGGTCTGTGGGCTGCATTTTTG                         CTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGC
genomic: GGCACACTACTCCACTCCGGTTGACATCTGGTCTGTGGGCTGCATTTTTGgtacggtgaa ... tgcattgcagCTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGC
EST: gi|58676453|gb|CK065140.1|CK065140
EST:     GGCACACTACTCCACTCCGGTTGACATCTGGTCTGTGGGCTGCATTTTTG                         CTGAGTTGGCCACTAACCAAACTCTTTTCGCTGGAGATTCCGAGGTTCAGC
genomic: GGCACACTACTCCACTCCGGTTGACATCTGGTCTGTGGGCTGCATTTTTGgtacggtgaa ... tgcattgcagCTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGC
EST: gi|33801905|gb|CF326824.1|CF326824
EST:     GGCACACTACTCCACTCCGGTTGACATCTGGTCTGTGGGCTGCATTTTTG                         CTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGC
genomic: GGCACACTACTCCACTCCGGTTGACATCTGGTCTGTGGGCTGCATTTTTGgtacggtgaa ... tgcattgcagCTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGC
EST: gi|89175978|gb|CI042999.1|CI042999
EST:     GGCACACTACTCCACTCCGGTTGACATCTGGTCTGTGGGCTGCATTTTTG                         CTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGC
genomic: GGCACACTACTCCACTCCGGTTGACATCTGGTCTGTGGGCTGCATTTTTGgtacggtgaa ... tgcattgcagCTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGC
EST: gi|88962742|gb|CI023842.1|CI023842
EST:     ACATCTGGTCTGTGGGCTGCATTTTTG                         CTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGC
genomic: ACATCTGGTCTGTGGGCTGCATTTTTGgtacggtgaa ... tgcattgcagCTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGC
EST: gi|86496840|gb|CI139473.1|CI139473
EST:     GGCACACTACTCCACTCCGGTTGACATCTGGTCTGTGGGCTGCATTTTTG                         CTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGC
genomic: GGCACACTACTCCACTCCGGTTGACATCTGGTCTGTGGGCTGCATTTTTGgtacggtgaa ... tgcattgcagCTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGC
EST: gi|86593618|gb|CI264497.1|CI264497
EST:     GGCACACTACTCCACTCCGGTTGACATCTGGTCTGTGGGCTGCATTTTTG                         CTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGC
genomic: GGCACACTACTCCACTCCGGTTGACATCTGGTCTGTGGGCTGCATTTTTGgtacggtgaa ... tgcattgcagCTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGC
EST: gi|88850591|gb|CI094856.1|CI094856
EST:     TCTGGTCTGTGGGCTGCATTTTTG                         CTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGC
genomic: TCTGGTCTGTGGGCTGCATTTTTGgtacggtgaa ... tgcattgcagCTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGC
EST: gi|58603848|gb|CK014376.1|CK014376
EST:     GGCACACTACTCCACTCCGGTTGACATCTGGTCTGTGGGCTGCATTTTTG                         CTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGC
genomic: GGCACACTACTCCACTCCGGTTGACATCTGGTCTGTGGGCTGCATTTTTGgtacggtgaa ... tgcattgcagCTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGC
EST: gi|3768776|gb|AU032803.1|AU032803
EST:     GCACACTACTTCACTNCGGTTGACATCTGGTCTGTGGGGCTGCATTTTTG                         CTGAGTTGGNCACTAACCAACCT
genomic: GCACACTACTCCACTCCGGTTGACATCTGGTCTGTGGG-CTGCATTTTTGgtacggtgaa ... tgcattgcagCTGAGTTGGCCACTAACCAACCT
EST: gi|88975465|gb|CI023716.1|CI023716
EST:     ACTACTCCACTCCGGTTGACATCTGGTCTGTGGGCTGCATTTTTG                         CTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGC
genomic: ACTACTCCACTCCGGTTGACATCTGGTCTGTGGGCTGCATTTTTGgtacggtgaa ... tgcattgcagCTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGC