1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTAAAATCGCAGATGGTAGCAATGCAGATATAGCGAATGACTTCTATCATCGGTACAAGgtgattccttttctgcttatgaggaatttgtaattttgtgtccgtttagttgagtccatggtaaattctgaaactgtgcag
species | Oryza sativa |
transcript | LOC_Os08g39870.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAGATGGTAGCAATGCAGATATAGCGAATGACTTCTATCATCGGTACAAG GAGGATTTGAACCTCATCACCGCGATGAACATGGATTCCTTCCGGTTCTCCEST: gi|87017540|gb|CI288080.1|CI288080
genomic: CAGATGGTAGCAATGCAGATATAGCGAATGACTTCTATCATCGGTACAAGgtgattcctt ... aactgtgcagGAGGATTTGAACCTCATCACCGCGATGAACATGGATTCCTTCCGGTTCTCC
EST: CAGATGGTAGCAATGCAGATATAGCGAATGACTTCTATCATCGGTACAAG GAGGATTTGAACCTCATCACCGCGATGAACATGGATTCCTTCCGGTTCTCCEST: gi|87005626|gb|CI287450.1|CI287450
genomic: CAGATGGTAGCAATGCAGATATAGCGAATGACTTCTATCATCGGTACAAGgtgattcctt ... aactgtgcagGAGGATTTGAACCTCATCACCGCGATGAACATGGATTCCTTCCGGTTCTCC
EST: CAGATGGTAGCAATGCAGATATAGCGAATGACTTCTATCATCGGTACAAG GAGGATTTGAACCTCATCACCGCGATGAACATGGATTCCTTCCGGTTCTCC
genomic: CAGATGGTAGCAATGCAGATATAGCGAATGACTTCTATCATCGGTACAAGgtgattcctt ... aactgtgcagGAGGATTTGAACCTCATCACCGCGATGAACATGGATTCCTTCCGGTTCTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAAAATCGCAGATGGTAGCAATGCAGATATAGCGAATGACTTCTATCATCGGTACAAGgtgattccttttctgcttatgaggaatttgtaattttgtgtccgtttagttgagtccatggtaaattctgaaactgtgcag
- - - - CAGATG
- - - - - - - - - - - GCAGAT