1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCATTGAAATCCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTGgtgaggaactataagtctatcacccttgtctggaactatcattctgttatatgtgcccgtctttctctcatcttgcttcaacaggttatccttctgtaccctttagatactgatgcaccttttatccttttctcttttatcacgtcatatgcag
species | Oryza sativa |
transcript | LOC_Os08g37320.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTG CTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGGEST: gi|88238980|gb|CI240142.1|CI240142
genomic: AGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTGgtgaggaact ... tcatatgcagCTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGG
EST: AGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTG CTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGGEST: gi|32948236|gb|BP184808.1|BP184808
genomic: AGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTGgtgaggaact ... tcatatgcagCTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGG
EST: AGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTG CTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGGEST: gi|33680057|gb|CF308296.1|CF308296
genomic: AGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTGgtgaggaact ... tcatatgcagCTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGG
EST: GTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTG CTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGGEST: gi|163925925|gb|EG714977.1|EG714977
genomic: GTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTGgtgaggaact ... tcatatgcagCTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGG
EST: AGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTG CTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGGEST: gi|33803307|gb|CF327527.1|CF327527
genomic: AGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTGgtgaggaact ... tcatatgcagCTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGG
EST: AGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTG CTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGGEST: gi|58669670|gb|CK058356.1|CK058356
genomic: AGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTGgtgaggaact ... tcatatgcagCTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGG
EST: AGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTG CTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGGEST: gi|163926597|gb|EG713613.1|EG713613
genomic: AGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTGgtgaggaact ... tcatatgcagCTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGG
EST: GTACCGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTG CTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGGEST: gi|29676939|gb|CB673214.1|CB673214
genomic: GTA-CGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTGgtgaggaact ... tcatatgcagCTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGG
EST: GTACAAGCCAAAGTTTGACGCGCTG CTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGGEST: gi|33802541|gb|CF327143.1|CF327143
genomic: GTACAAGCCAAAGTTTGATGCGCTGgtgaggaact ... tcatatgcagCTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGG
EST: AGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTG CTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGGEST: gi|58030598|gb|CX728141.1|CX728141
genomic: AGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTGgtgaggaact ... tcatatgcagCTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGG
EST: CAAAGTTTGATGCGCTG CTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGGEST: gi|163920020|gb|EG709826.1|EG709826
genomic: CAAAGTTTGATGCGCTGgtgaggaact ... tcatatgcagCTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGG
EST: AGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTG CTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGGEST: gi|33661510|gb|CF292477.1|CF292477
genomic: AGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTGgtgaggaact ... tcatatgcagCTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGG
EST: GTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTG CTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGGEST: gi|33683470|gb|CF311709.1|CF311709
genomic: GTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTGgtgaggaact ... tcatatgcagCTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGG
EST: AGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTG CTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGGEST: gi|5456492|gb|AU075803.1|AU075803
genomic: AGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTGgtgaggaact ... tcatatgcagCTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGG
EST: GTACCGTTGACCCCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTG CTTGTTGAGCTGAAAGANGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGGEST: gi|33662295|gb|CF293262.1|CF293262
genomic: GTA-CGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTGgtgaggaact ... tcatatgcagCTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGG
EST: AGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTG CTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTTTGAAGGAGTCAGAGAGGEST: gi|163918517|gb|EG711627.1|EG711627
genomic: AGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTGgtgaggaact ... tcatatgcagCTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGG
EST: AGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTG CTTGTTGAGCTGAAAGAAGCEST: gi|32947994|gb|BP184566.1|BP184566
genomic: AGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTGgtgaggaact ... tcatatgcagCTTGTTGAGCTGAAAGAAGC
EST: AGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTG CTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGGEST: gi|163920610|gb|EG711789.1|EG711789
genomic: AGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTGgtgaggaact ... tcatatgcagCTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGG
EST: AGTACGTTGACACCGTGACTCCTCAGTACAAGCCATAGCTTGATGCGCTG CTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGGEST: gi|27577854|gb|CB000549.1|CB000549
genomic: AGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTGgtgaggaact ... tcatatgcagCTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGG
EST: AGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTG CTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGGEST: gi|33679750|gb|CF307989.1|CF307989
genomic: AGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTGgtgaggaact ... tcatatgcagCTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGG
EST: CAGTACAAGCCAAAGTTTGATGCGCTG CTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGG
genomic: CAGTACAAGCCAAAGTTTGATGCGCTGgtgaggaact ... tcatatgcagCTTGTTGAGCTGAAAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATTGAAATCCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTGgtgaggaactataagtctatcacccttgtctggaactatcattctgttatatgtgcccgtctttctctcatcttgcttcaacaggttatccttctgtaccctttagatactgatgcaccttttatccttttctcttttatcacgtcatatgcag
- - - - - - - - - - - - - - - - CTCCTC