Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGCCTGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacataatgctagatattctgatgtgaaaactttcaagatctgtattgtggtcttattagctgcaactgtaactctgcag

Basic information

species Oryza sativa
transcript LOC_Os08g33920.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g33920.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM5G820996_T01 (Zea mays), 5'ss of exon 3
TGAGGCCTGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacataatgctag--atattctgatgtgaaaactttcaagatctgta---ttgtggtcttattagctgcaactgtaactctgcag
|||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||| ||| |||||||| |||| |||| |||  |   |  ||||| || ||||||| |   || |||||||    ||||  |||||| |||| | |||    || || ||
TGAGACCTGCCGAGTACAAGAGGTCCAGGTTGTCTAGGAACCGCAGGACTGTTAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaatagaggcgggcatattgtgttgtgaaagc--ccaggatctgtcatcttgtaatcttatgagctactact----ctatgtag

upper sequence: LOC_Os08g33920.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G152552_T01 (Zea mays), 5'ss of exon 3
TGAGGCCTGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacataatgc-tagatattctgatgtgaaaactttcaagatctgta---ttgtggtcttattagctgcaactgtaactctgcag
||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||| ||||||||||| |||||||||| ||| |||||||| |||| |||| |||  |  | || ||  ||  |||   |  | || | ||||||   | || ||||||| |  | |||||     | |||||
TGAGGCCTGCTGAGTACAAAAGGTCCAGGTTGCCTAGGAGCCGCAGGACTGTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaatagggggtggacatattgtggtgtggaggtccaggttctgtaatttcgtagtcttatgaattacaactactg-tatgcag

upper sequence: LOC_Os08g33920.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA18G49340.1 (Glycine max), 5'ss of exon 3
TGAGGCCTGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagt-acataatgctagatattctgat-gtgaaaactttcaagatctgtattgtggtcttattagctgcaactgtaactctgcag---
| || |||||||| ||||||||||| || ||| |||||||||||||||| || |||||  | ||||| || ||  | || ||    || ||||| |||||||  ||  |  ||   |   ||   |  |  || ||| ||||    |   |   ||    |||  ||||     |||||   |||     
TAAGACCTGCTGAATACAAGAGGTCTAGATTGCCTAGGAACCGCAGGACCGTAAACCGAGCCTATGGAGGTGTTTTATCCGGGGGAGCTGTTAGAGAAAGgtatgttgctcaaaaatcactagattatttatgcaaattttcttagt---tgaagtaaatttaacagcta----tgtaatcttgctatag

upper sequence: LOC_Os08g33920.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA01G05740.1 (Glycine max), 5'ss of exon 3
TGAGGCCTGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagt---acataatgctagatattctgatgtgaaaactttcaagatctgtattgtggtcttattagctgcaactgtaactctgcag
|||||||||| |||||||||||||| |||||  | || ||||| |||||||| |||||| |||||||||||||  | ||||||| ||| || ||||| ||||  ||   ||   |   |  | |     || | | ||        ||   | |  | || |  |||  |  | || |   |||  ||
TGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAACCGTAGGACTGTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgttttactagacttttaacagctatatattataataactcgtatg-atttaattgtttgcttacatttatctctggttctatag

upper sequence: LOC_Os08g33920.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA18G14980.1 (Glycine max), 5'ss of exon 3
-TGAGGCCTGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacataatg--ctagatattctgatgtgaa-aactttca------agatctgtattgtggtcttattagctgcaactgtaactctgcag
 | ||||| || ||||| || || || |||||    || ||||| ||||||||||||||| |||||||||| ||| | ||||| | ||| ||||| |||||||  ||   |       |   || |||  | ||   || |||||      | ||  ||   ||    |  |||  |    || |   ||||   
TTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAACCGAAGGACTGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttttctcaattttcttagtctactatgcttaattttcattgtgcaaattagtggagtaccttgcttacttttgtctctggttctgtta

upper sequence: LOC_Os08g33920.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA02G11920.1 (Glycine max), 5'ss of exon 3
TGAGGCCTGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtac-ataatgct-----agatattctgatgtgaaaactttcaagatctgtat-tgtggtcttattagctgcaactgtaactctgcag----------------
|||||||||| ||||||||||| || |||||  | || ||||| |||||||| |||||| ||||||| |||||  | ||||||| ||| || ||||| ||||  ||   |   | ||     || |||     | | | ||||  || ||| |   | | ||||    || | |   |   |   | |                    
TGAGGCCTGCAGAGTACAAGAGATCAAGGTTACCCAGAAACCGTAGGACTGTCAACCGTGCATATGGCGGAGTTTTGTCTGGAAGTGCTGTCAGGGAGAGgtttgttttactctacttttacagttatatatttataataactcgcatgatttaattatatggtaaagttggtttatagcatgcttttatttgtgtctggttctatag

upper sequence: LOC_Os08g33920.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA09G37360.1 (Glycine max), 5'ss of exon 3
TGAGGCCTGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacataatgctagatattctgatgtgaaaactttcaagatctgtattgtggtcttattagctgcaactgtaactctgcag-----
|||| |||||||| ||||||||||| || ||| || ||||||||||||| || |||||  | || || || ||  | || |||   || ||||| |||||||    |  |    | | |  |  | |  ||      || || || |   | || |   ||  |  | || |  |   |     |     
TGAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAACCGCAGGACCGTAAACCGAGCCTACGGAGGTGTTTTATCAGGAGGAGCTGTTAGAGAAAGgt----atgttgctcaaaaagtctttagatgtttttgttgaaaattttcttagttgaagtaa-atttacagccatttattcatggtatag

upper sequence: LOC_Os08g33920.1 (Oryza sativa), 5'ss of exon 3
lower sequence: AT1G26880.1 (Arabidopsis thaliana), 5'ss of exon 3
TGAGGCCTGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagta---cataatgctaga-----tattctgatgtgaaaactttcaagatctgtattgtggtcttattagctgcaactgtaactctgcag
|||||||  |||||||||||||||| || || || || ||| | |||||||| |||||  |||| ||||||||  | |||||  ||||||| ||||||||||  ||    |||  | || ||       ||||  |   | || |||   | ||| ||  ||  | || ||   |   | |   ||       
TGAGGCCCTCTGAGTACAAGAGGTCAAGATTATCAAGAAACAGGAGGACTGTAAACCGAGCATACGGTGGAGTCTTGTCTGGTTCTGCAGTCAGGGAAAGgtttgttgtccatcttacttgagtcatctttctattacaataaatttggtgttctttaacgtaatgttgtt--tttggattccgacag-----

upper sequence: LOC_Os08g33920.1 (Oryza sativa), 5'ss of exon 3
lower sequence: AT3G28900.1 (Arabidopsis thaliana), 5'ss of exon 3
TGAGGCCTGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacataatgctagatattctgatgtgaaaactttcaagatctgtattgtggtct-tattagctgcaactgtaactctgcag
|||| |||||||||||||| ||||| |||||| | ||||||   ||||| ||||| ||| |||||||||| || || ||||||  ||| |||||||| |||| |||  ||  |   |||  |  | |         | |  |||   ||||||       | |||       || |    | |   
TGAGACCTGCTGAGTACAAAAGGTCAAGGTTGGCAAGGAACGAGAGGACAGTGAATCGTGCATATGGTGGTGTTCTATCTGGAGTTGCTGTTAGGGAGAGgtaagtgtattgtaa-agacctcttaaaaattggtttctttaga---gtattgcaactaatcttactcttttctctgttccag---

upper sequence: LOC_Os08g33920.1 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv01s0026g02410.t01 (Vitis vinifera), 5'ss of exon 3
TGAGGCCTGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgt----cagtaca---------taatgct-----agatattctgatgtgaaaactttcaagatctgtattgtgg------tcttattagctgcaactgtaactctgcag
| || ||||| || ||||||||||| || ||  |||||||||| ||||||||||||||| | ||||| || ||| | ||||||  ||| || ||||||||||     || | |          | ||||     | ||  | | || || ||| ||| ||||||    |||  |      ||||  |   | ||| ||    | || ||
TAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAACCGTAGGACTGTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagcaaagtttctgttcagtgctcattcatatcatttcatatggaaagttttaagatcaactttgctggacatgtctttattttttcaattg--gttttgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88567701|gb|CI498418.1|CI498418
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|88373025|gb|CI501019.1|CI501019
EST:     NTGAACCGTCCATATGNTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|88667339|gb|CI715497.1|CI715497
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|88909070|gb|CI718378.1|CI718378
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|88293654|gb|CI505571.1|CI505571
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|13896492|gb|AU182828.1|AU182828
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTNTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|86421848|gb|CI059421.1|CI059421
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|89171624|gb|CI720683.1|CI720683
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|163928141|gb|EG713573.1|EG713573
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|88981573|gb|CI027190.1|CI027190
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|8956388|gb|BE230175.1|BE230175
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCATTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|88973200|gb|CI717729.1|CI717729
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|89170110|gb|CI039387.1|CI039387
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|88435926|gb|CI514065.1|CI514065
EST:     GTGAACCNTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|88955252|gb|CI721824.1|CI721824
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|88565732|gb|CI496449.1|CI496449
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|88473452|gb|CI410723.1|CI410723
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|88563073|gb|CI493790.1|CI493790
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|88905037|gb|CI712336.1|CI712336
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|88547349|gb|CI477636.1|CI477636
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|7273822|gb|AU083366.1|AU083366
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCA-TTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAAGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|88282122|gb|CI403518.1|CI403518
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|38470454|gb|CF954585.1|CF954585
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|88237405|gb|CI237254.1|CI237254
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|88666877|gb|CI719013.1|CI719013
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|58669464|gb|CK058150.1|CK058150
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|55410863|gb|CV723239.1|CV723239
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|88982496|gb|CI027965.1|CI027965
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|56158237|gb|C91722.2|C91722
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCC
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTT-GGTCGAGGAGCAGAAGATTGTCAAGAAGGTCC
EST: gi|88904859|gb|CI712158.1|CI712158
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|88561493|gb|CI492210.1|CI492210
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|89196872|gb|CI402626.1|CI402626
EST:     ACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: ACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|88719483|gb|CI742993.1|CI742993
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGT
EST: gi|88509282|gb|CI436788.1|CI436788
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|88379938|gb|CI513528.1|CI513528
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|88309305|gb|CI655313.1|CI655313
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|88594137|gb|CI713232.1|CI713232
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|88293544|gb|CI505461.1|CI505461
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|88674494|gb|CI728607.1|CI728607
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|88289916|gb|CI525248.1|CI525248
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|15849588|gb|BI797850.1|BI797850
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|38470560|gb|CF954691.1|CF954691
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCC
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGT-GCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCC
EST: gi|88904692|gb|CI711991.1|CI711991
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|88287335|gb|CI502692.1|CI502692
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|88419855|gb|CI516304.1|CI516304
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAAGTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGTTGGAGGACCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|88439988|gb|CI543905.1|CI543905
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGTTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|88522071|gb|CI449804.1|CI449804
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAAGTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|88419089|gb|CI511241.1|CI511241
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|88378324|gb|CI503890.1|CI503890
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|2442900|gb|C74671.1|C74671
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|3762584|gb|AU029336.1|AU029336
EST:     GAACCGTCCCATAATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GAACCGT-CCAT-ATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: gi|88669585|gb|CI723249.1|CI723249
EST:     GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 73 (downstream exon)
Score: 59

TGAGGCCTGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacat ... aactctgcagGATCATCCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCTGAAAATACAGAAAACCAAGGACAAGACCGCAAAGTAGAGCTCCTTTGTA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAGGCCTGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagtacataatgctagatattctgatgtgaaaactttcaagatctgtattgtggtcttattagctgcaactgtaactctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG