Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCTACAGGAGAAGAGATATCTGCTGAGGACCTTGGTGGAGCATCAGTGCATTGTAAGATATCAGGAGTCTCTGATCACTTTGCACAAGgtaagatttaacatcatccacagtataatatgacttgattactttcctatatagataacatttcaattttacttcctctcttttgtacatcatcattggc...

Basic information

species Oryza sativa
transcript LOC_Os08g32850.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g32850.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G702490_T01 (Zea mays), 5'ss of exon 3
GCTGCTACAGGAGAAGAGATATCTGCTGAGGACCTTGGTGGAGCATCAGTGCATTGTAAGATATCAGGAGTCTCTGATCACTTTGCACAAGgtaagatttaacatcatccacagtataatatgacttgattactttcctat---atagataacatttcaattttacttcctctcttttgtacatcatcattggc
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||| ||||| |||||||||||||   ||||||| ||   || | |   ||||||| |||||||| ||| |   |||  | |||||    ||| |   | | | || | ||       | ||  
GCTGCTACAGGAGAGGAGATATCTGCTGAGGACCTTGGTGGAGCATCAGTACATTGCAAGGTATCAGGAGTCTCAGATCATTTTGCACAAGgtatagtttaacagcacttactgcagtgtatgactcgattacttccctcttggatatttgacattc---tttaaaaccttatattctatatgcttctaatgaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29640036|gb|CB645045.1|CB645045
EST:     AGCATCAGTGCATTGTAAGATATCAGGAGTCTCTGATCACTTTGCACAAG                         ATGAGCTTCATGGGCTAACATTGGGAAGAAACATTGTGAAGAACCTCCACT
genomic: AGCATCAGTGCATTGTAAGATATCAGGAGTCTCTGATCACTTTGCACAAGgtaagattta ... attgatgtagATGAGCTTCATGGGCTAACATTGGGAAGAAACATTGTGAAGAACCTCCACT
EST: gi|29674091|gb|CB670366.1|CB670366
EST:     AGCATCAGTGCATTGTAAGATATCAGGAGTCTCTGATCACTTTGCACAAG                         ATGAGCTTCATGGGCTAACATTGGGAAGAAACATTGTGAAGAACCTCCACT
genomic: AGCATCAGTGCATTGTAAGATATCAGGAGTCTCTGATCACTTTGCACAAGgtaagattta ... attgatgtagATGAGCTTCATGGGCTAACATTGGGAAGAAACATTGTGAAGAACCTCCACT
EST: gi|29640074|gb|CB645083.1|CB645083
EST:     AGCATCAGTGCATTGTAAGATATCAGGAGTCTCTGATCACTTTGCACAAG                         ATGAGCTTCATGGGCTAACATTGGGAAGAAACATTGTGAAGAACCTCCACT
genomic: AGCATCAGTGCATTGTAAGATATCAGGAGTCTCTGATCACTTTGCACAAGgtaagattta ... attgatgtagATGAGCTTCATGGGCTAACATTGGGAAGAAACATTGTGAAGAACCTCCACT
EST: gi|29681516|gb|CB677791.1|CB677791
EST:     AGCATCAGTGCATTGTAAGATATCACGAGTCTCTGATCACTTTGCACAAG                         ATGAGCTTCATGGGCTAACATTGGGAAGAAACATTGTGAAGAACCTCCACT
genomic: AGCATCAGTGCATTGTAAGATATCAGGAGTCTCTGATCACTTTGCACAAGgtaagattta ... attgatgtagATGAGCTTCATGGGCTAACATTGGGAAGAAACATTGTGAAGAACCTCCACT