1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGTGGGCGAAAGTGTGCAGAAGCCATTGCTTTATTACGACAACAATGTTAATGGAACAGTAAATCTTCTGGAAGTTATGTCTGCCCATGGATGTAAGAAGgtatttatcctttgcactttgatacacatagtaacatcaagctctgtggactgtacttacaacaaataggttggattttgatatttttatttcgctggttacctttagactctggcattgacatactgttcctcctttttttttgtatgttcaaatgttgtag
species | Oryza sativa |
transcript | LOC_Os08g28730.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATGGAACAGTAAATCTTCTGGAAGTTATGTCTGCCCATGGATGTAAGAAG TTGGTGTTCTCATCATCAGCTGCAGTTTATGGATCACCGAAGAACTCACCCEST: gi|163928869|gb|EG709747.1|EG709747
genomic: ATGGAACAGTAAATCTTCTGGAAGTTATGTCTGCCCATGGATGTAAGAAGgtatttatcc ... aatgttgtagTTGGTGTTCTCATCATCAGCTGCAGTTTATGGATCACCGAAGAACTCACCC
EST: ATGGAACAGTAAATCTTCTGGAAGTTATGTCTGCCCATGGATGTAAGAAG TTGGTGTTCTCATCATCAGCTGCAGTTTATGGATCACCGAAGAACTCACCCEST: gi|58662148|gb|CK050828.1|CK050828
genomic: ATGGAACAGTAAATCTTCTGGAAGTTATGTCTGCCCATGGATGTAAGAAGgtatttatcc ... aatgttgtagTTGGTGTTCTCATCATCAGCTGCAGTTTATGGATCACCGAAGAACTCACCC
EST: ATGGAACAGTAAATCTTCTGGAAGTTATGTCTGCCCATGGATGTAAGAAG TTGGTGTTCTCATCATCAGCTGCAGTTTATGGATCACCGAAGAACTCACCC
genomic: ATGGAACAGTAAATCTTCTGGAAGTTATGTCTGCCCATGGATGTAAGAAGgtatttatcc ... aatgttgtagTTGGTGTTCTCATCATCAGCTGCAGTTTATGGATCACCGAAGAACTCACCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGGGCGAAAGTGTGCAGAAGCCATTGCTTTATTACGACAACAATGTTAATGGAACAGTAAATCTTCTGGAAGTTATGTCTGCCCATGGATGTAAGAAGgtatttatcctttgcactttgatacacatagtaacatcaagctctgtggactgtacttacaacaaataggttggattttgatatttttatttcgctggttacctttagactctggcattgacatactgttcctcctttttttttgtatgttcaaatgttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG