1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GGGATGAAGAAGAGGAGCGTGCTGTCTTTTCCTTCCAGCAGGAGCTTTTTAGCAGGAACTTGCTGCCTGACAAGCATAACGATTACCACATGTTGCTGAGgttggtgttggaacaatgctgaaagattgagagctactgaagcatgcagttgtttgtttctttctttcttcctttctttttttcttttgtgctgaagctctttctagttttatttgcaatatgtgtctaaaagttgtatgccttcattatctctatag
species | Oryza sativa |
transcript | LOC_Os08g25310.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGCAGGAACTTGCTGCCTGACAAGCATAACGATTACCACATGTTGCTGAG GTTTTTGAAGGCTAGGAAATTTGACACTGAGAAAGCCATTCEST: gi|29638640|gb|CB643649.1|CB643649
genomic: AGCAGGAACTTGCTGCCTGACAAGCATAACGATTACCACATGTTGCTGAGgttggtgttg ... atctctatagGTTTTTGAAGGCTAGGAAATTTGACACTGAGAAAGCCATTC
EST: AGCAGGAACTTGCTGCCTGACAAGCATAACGATTACCACATGTTGCTGAG GTTTTTGAAGGCTAGGAAATTTGACACTGAGAAAGCCATTCAAATGTGGGCEST: gi|29640687|gb|CB645696.1|CB645696
genomic: AGCAGGAACTTGCTGCCTGACAAGCATAACGATTACCACATGTTGCTGAGgttggtgttg ... atctctatagGTTTTTGAAGGCTAGGAAATTTGACACTGAGAAAGCCATTCAAATGTGGGC
EST: ATGTTGCTGAG GTTTTTGAAGGCTAGGAAATTTGACACTGAGAAAGCCATTCAAATGTGGGCEST: gi|29675314|gb|CB671589.1|CB671589
genomic: ATGTTGCTGAGgttggtgttg ... atctctatagGTTTTTGAAGGCTAGGAAATTTGACACTGAGAAAGCCATTCAAATGTGGGC
EST: AGCAGGAACTTGCTGCCTGACAAGCATAACGATTACCACATGTTGCTGAG GTTTTTGAAGGCTAGGAAATTTGACACTGAGAAAGCCATTCAAATGTGGGC
genomic: AGCAGGAACTTGCTGCCTGACAAGCATAACGATTACCACATGTTGCTGAGgttggtgttg ... atctctatagGTTTTTGAAGGCTAGGAAATTTGACACTGAGAAAGCCATTCAAATGTGGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGATGAAGAAGAGGAGCGTGCTGTCTTTTCCTTCCAGCAGGAGCTTTTTAGCAGGAACTTGCTGCCTGACAAGCATAACGATTACCACATGTTGCTGAGgttggtgttggaacaatgctgaaagattgagagctactgaagcatgcagttgtttgtttctttctttcttcctttctttttttcttttgtgctgaagctctttctagttttatttgcaatatgtgtctaaaagttgtatgccttcattatctctatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC