1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGACATGAAGGATAAAGTTTTGCGCAGCTATGCAGAGATGGAGAACGTCATTGCGAGAACAAAGCGTGAATCAGATAATGCAAAGAAGTATGCAGTACAGgtctgtattctatgtctggtcatgattttttagaatcttgttttactttggaaatgagctcacgtctattcatccctgtag
species | Oryza sativa |
transcript | LOC_Os08g25090.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGCGAGAACAAAGCGTGAATCAGATAATGCAAAGAAGTATGCAGTACAG GGCTTCTCCAAGAGCTTGTTAGATGTTGCAGACAATTTATCTAGGGCATCAEST: gi|29665018|gb|CB661293.1|CB661293
genomic: TTGCGAGAACAAAGCGTGAATCAGATAATGCAAAGAAGTATGCAGTACAGgtctgtattc ... atccctgtagGGCTTCTCCAAGAGCTTGTTAGATGTTGCAGACAATTTATCTAGGGCATCA
EST: TTGCGAGAACAAAGCGTGAATCAGATAATGCAAAGAAGTATGCAGTACAG GGCTTCTCCAAGAGCTTGTTAGATGTTGCAGACAATTTATCTAGGGCATCAEST: gi|27554120|gb|CA998020.1|CA998020
genomic: TTGCGAGAACAAAGCGTGAATCAGATAATGCAAAGAAGTATGCAGTACAGgtctgtattc ... atccctgtagGGCTTCTCCAAGAGCTTGTTAGATGTTGCAGACAATTTATCTAGGGCATCA
EST: TTGCGAGAACAAAGCGTGAATCAGATAATGCAAAGAAGTATGCAGTACAG GGCTTCTCCAAGAGCTTGTTAGATGTTGCAGACAATTTATCTAGGGCATCA
genomic: TTGCGAGAACAAAGCGTGAATCAGATAATGCAAAGAAGTATGCAGTACAGgtctgtattc ... atccctgtagGGCTTCTCCAAGAGCTTGTTAGATGTTGCAGACAATTTATCTAGGGCATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGACATGAAGGATAAAGTTTTGCGCAGCTATGCAGAGATGGAGAACGTCATTGCGAGAACAAAGCGTGAATCAGATAATGCAAAGAAGTATGCAGTACAGgtctgtattctatgtctggtcatgattttttagaatcttgttttactttggaaatgagctcacgtctattcatccctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT