1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTTGGATGGAGCGGATAACATGGGTTTCGGCCTTCCCACAGAAAGCGAGCGATCCCTAATGGAGCGTGTCCGTCAAGAGCTAAAGCATGAACTAAAGCAGgtttgaaatggattccaataattgcttttcagggggaaaaatggacatgttgatgaatctcagtactaatcacttggcaaattcag
species | Oryza sativa |
transcript | LOC_Os08g19650.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GATCCCTAATGGAGCGTGTCCGTCAAGAGCTAAAGCATGAACTAAAGCAG GGTTACAAAGAGAAGCTGATTGACATAAGAGAAGAAATTCTTCGCAAGCGAEST: gi|29685658|gb|CB681933.1|CB681933
genomic: GATCCCTAATGGAGCGTGTCCGTCAAGAGCTAAAGCATGAACTAAAGCAGgtttgaaatg ... gcaaattcagGGTTACAAAGAGAAGCTGATTGACATAAGAGAAGAAATTCTTCGCAAGCGA
EST: GATCCCTAATGGAGCGTGTCCGTCAAGAGCTAAAGCATGAACTAAAGCAG GGTTACAAAGAGAAGCTGATTGACATAAGAGAAGAAATTCTTCGCAAGCGAEST: gi|29639210|gb|CB644219.1|CB644219
genomic: GATCCCTAATGGAGCGTGTCCGTCAAGAGCTAAAGCATGAACTAAAGCAGgtttgaaatg ... gcaaattcagGGTTACAAAGAGAAGCTGATTGACATAAGAGAAGAAATTCTTCGCAAGCGA
EST: GATCCCTAATGGAGCGTGTCCGTCAAGAGCTAAAGCATGAACTAAAGCAG GGTTACAAAGAGAAGCTGATTGACATAAGAGAAGAAATTCTTCGCAAGCGAEST: gi|58687578|gb|CK076265.1|CK076265
genomic: GATCCCTAATGGAGCGTGTCCGTCAAGAGCTAAAGCATGAACTAAAGCAGgtttgaaatg ... gcaaattcagGGTTACAAAGAGAAGCTGATTGACATAAGAGAAGAAATTCTTCGCAAGCGA
EST: CCCTAATGGAGCGTGT-CGTCAAGAGCTAAAGCATGAACTAAAGCAG GCTTACAAAGAGAAGCTGATTGACATAAGAGAAGAAATTCTTCGCAAGCGAEST: gi|38469479|gb|CF953610.1|CF953610
genomic: CCCTAATGGAGCGTGTCCGTCAAGAGCTAAAGCATGAACTAAAGCAGgtttgaaatg ... gcaaattcagGGTTACAAAGAGAAGCTGATTGACATAAGAGAAGAAATTCTTCGCAAGCGA
EST: GATCCCTAATGGAGCGTGTCCGTCAAGAGCTAAAGCATGAACTAAAGCAG GGTTACAAAGAGAAGCTGATTGACATAAGAGAAGAAATTCTTCGCAAGCGAEST: gi|58589921|gb|CF988229.1|CF988229
genomic: GATCCCTAATGGAGCGTGTCCGTCAAGAGCTAAAGCATGAACTAAAGCAGgtttgaaatg ... gcaaattcagGGTTACAAAGAGAAGCTGATTGACATAAGAGAAGAAATTCTTCGCAAGCGA
EST: GATCCCTAATGGAGCGTGTCCGTCAAGAGCTAAAGCATGAACTAAAGCAG GGTTACAAAGAGAAGCTGATTGACATAAGAGAAGAAATTCTTCGCAAGCGAEST: gi|58689922|gb|CK078609.1|CK078609
genomic: GATCCCTAATGGAGCGTGTCCGTCAAGAGCTAAAGCATGAACTAAAGCAGgtttgaaatg ... gcaaattcagGGTTACAAAGAGAAGCTGATTGACATAAGAGAAGAAATTCTTCGCAAGCGA
EST: GATCCCTAATGGAGCGTGTCCGTCAAGAGCTAAAGCATGAACTAAAGCAG GGTTACAAAGAGAAGCTGATTGACATAAGAGAAGAAATTCTTCGCAAGCGA
genomic: GATCCCTAATGGAGCGTGTCCGTCAAGAGCTAAAGCATGAACTAAAGCAGgtttgaaatg ... gcaaattcagGGTTACAAAGAGAAGCTGATTGACATAAGAGAAGAAATTCTTCGCAAGCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGGATGGAGCGGATAACATGGGTTTCGGCCTTCCCACAGAAAGCGAGCGATCCCTAATGGAGCGTGTCCGTCAAGAGCTAAAGCATGAACTAAAGCAGgtttgaaatggattccaataattgcttttcagggggaaaaatggacatgttgatgaatctcagtactaatcacttggcaaattcag
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