1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CGATTGGGTTCAACGTGGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTCTGGGATCTCGgtgagtgtgcccccaagtctctgattcacgaggactggtttagatttttccgcgagacaatttataagtacaatttacgacaatatccatgaggccaatt...
species | Oryza sativa |
transcript | LOC_Os08g15040.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGTACAACAACATCAAGTTCCAAGTCTGGGATCTCG GTGGTCAAACAAGCATCAGEST: gi|8956150|gb|BE229954.1|BE229954
genomic: AGTACAACAACATCAAGTTCCAAGTCTGGGATCTCGgtgagtgtgc ... ttctcaacagGTGGTCAAACAAGCATCAG
EST: GAGACGGTGCAGTACAACAACATCAAGTTCCAAGTCTGGGATCTCG GTGGTCAAACAAGCATCAGEST: gi|27554607|gb|CA998507.1|CA998507
genomic: GAGACGGTGCAGTACAACAACATCAAGTTCCAAGTCTGGGATCTCGgtgagtgtgc ... ttctcaacagGTGGTCAAACAAGCATCAG
EST: TGGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTCTGGGATCTCG GTGGTCAAACAAGCATCAAEST: gi|88383993|gb|CI631883.1|CI631883
genomic: TGGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTCTGGGATCTCGgtgagtgtgc ... ttctcaacagGTGGTCAAACAAGCATCAG
EST: CGTGGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTCTGGGATCTCG GTGGTCAAACAAGCATCAGEST: gi|218486133|gb|FG956315.1|FG956315
genomic: CGTGGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTCTGGGATCTCGgtgagtgtgc ... ttctcaacagGTGGTCAAACAAGCATCAG
EST: CGTGGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTCTGGGATCTCG GTGGTCAAACAAGCATCAGEST: gi|27554323|gb|CA998223.1|CA998223
genomic: CGTGGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTCTGGGATCTCGgtgagtgtgc ... ttctcaacagGTGGTCAAACAAGCATCAG
EST: TGGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTCTGGGATCTCG GTGGTCAAACAAGCATCAG
genomic: TGGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTCTGGGATCTCGgtgagtgtgc ... ttctcaacagGTGGTCAAACAAGCATCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGATTGGGTTCAACGTGGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTCTGGGATCTCGgtgagtgtgcccccaagtctctgattcacgaggactggtttagatttttccgcgagacaatttataagtacaatttacgacaatatccatgaggccaatt
- - - - - - - GTGGAG
- - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgccccc