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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCGGACGCGGGGAACCTCGAGCACTGCGCCAGGTACCTCAACCAGACGCTCGTCACCTTCGGCTTCCCGGCCTCGCTCGATCTCTTCGCCACCGACCCCgtagggttccttttcttcctcctctctctcccccctcctgatctactttgcggattttggttctgatttccctagtgccgtgagatttgtggggggttta...

Basic information

species Oryza sativa
transcript LOC_Os08g14460.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g14460.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G147500_T05 (Zea mays), 5'ss of exon 3
CGCGGACGCGGGGAACCTCGAGCACTGCGCCAGGTACCTCAACCAGACGCTCGTCACCTTCGGCTTCCCGGCCTCGCTCGATCTCTTCGCCACCGACCCCgtagggttccttttcttcctcctctctctcccccctcctgatctactttgcgg--attttggttctgatttccctagtgccgtgagatttgtggggggttta-
|||  |||||| |||||| |||||||||||| ||||||| ||||||||||||||||||||||| |||||||| || ||||| |||||||||||||| || ||       |||  ||  |||| |   ||| |  || ||   |   | ||     |||| |||   |          |||  |  |||||  ||||  |||| 
CGCAAACGCGGAGAACCTGGAGCACTGCGCCCGGTACCTGAACCAGACGCTCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCGgtccttcctcttccctctctcccccggctcgcagctgcttcacgtttatgtattcatttcggtcgcgggggtttgtttgct-tatgattttcgggg--tttaa

upper sequence: LOC_Os08g14460.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA17G07040.2 (Glycine max), 5'ss of exon 3
CGCGGACGCGGGGAACCTCGAGCACTGCGCCAGGTACCTCAACCAGACGCTCGTCACCTTCGGCTTCCCGGCCTCGCTCGATCTCTTCGCCACCGACCCCgtagg---------gttccttttcttcctcctctctctcccccctcctgatctactttgcggattttggttctgatttccctagtgccgt---gagatttgtggggggttta
||| || ||||  ||  | ||||| ||||| | ||| ||||||||  |||||||||| || || |||||||| ||||||||||||||||| |  ||||||||  |         | |||  |||   ||    | |        |  ||  | | | |  | | | ||    | || |   |  ||| ||   || |  |||||  |     
CGCCGATGCGGACAATTTGGAGCATTGCGCTAAGTATCTCAACCAATCGCTCGTCACGTTTGGTTTCCCGGCTTCGCTCGATCTCTTCGCAAATGACCCCgtgagtattgaactgatcccgttccgtctttcatgtgcattgttttttgcgccaatgtatgtagtatgcacattatgtgaatgatgctgttttgaaaaatgtggtag-----

upper sequence: LOC_Os08g14460.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA13G00980.1 (Glycine max), 5'ss of exon 3
CGCGGACGCGGGGAACCTCGAGCACTGCGCCAGGTACCTCAACCAGACGCTCGTCACCTTCGGCTTCCCGGCCTCGCTCGATCTCTTCGCCACCGACCCCgtagggttccttttcttcctcctctctctcccccctcc--tgatctactttgcggattttggttctgatttccctagtgccgtgagatt--tgtggggggttta----
||| || |  | |||  | ||||| ||||| ||||| ||||||||  |||||||||| || || |||||||| || |||||||||||||| |  ||||||||  |  |     |  |||   ||| |||  |   | |  || | |  ||| ||    |  ||     | |     |||   |||  ||  | |||    | |     
CGCCGATGTTGAGAATTTGGAGCATTGCGCTAGGTATCTCAACCAATCGCTCGTCACGTTTGGTTTCCCGGCTTCTCTCGATCTCTTCGCAAATGACCCCgtgagaattgaactgatcccgttctgtctttcatttacattgttttgtttttcgccaatgtgtgagcgtgtgttatgtga-atgatgttgttctggaaaatgtggtag

upper sequence: LOC_Os08g14460.1 (Oryza sativa), 5'ss of exon 2
lower sequence: Vv11s0052g00890.t01 (Vitis vinifera), 5'ss of exon 3
CGCGGACGCGGGGAACCTCGAGCACTGCGCCAGGTACCTCAACCAGACGCTCGTCACCTTCGGCTTCCCGGCCTCGCTCGATCTCTTCGCCACCGACCCCgtagggttccttttcttcctcctctctctcccccctcctgatctactttgcggattttggttctgatttccctagtgccgtgagatttgtggggggttta
|||||| ||||| ||| | ||||| || |||| |||  | |||||||||||||| || ||||| |||||||||||||||||||| ||||||  ||| || ||  ||     ||  ||     |   | |            | |  |||  ||| |  |||| |||||       |   | |   || ||||  |     
CGCGGATGCGGGAAACTTGGAGCATTGTGCCAAGTATTTGAACCAGACGCTCGTGACGTTCGGATTCCCGGCCTCGCTCGATCTGTTCGCCGGCGATCCGgtgcggagtggttgtttgtggattgtttt-----------gtgtggttttgggagtggggttttgattgttgcgtttttgcgcttttggtggtag-----