1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCAAAGAAATCTGGCAAAGGGAAGAAGCCTGGCAAGGGAGGTAACCGCTTCTGGAAGAATATTGGCCTTGGCTTCAAGACACCCCGGGAAGCAATTGAAGgtaataaataaattcttccctgtaactatgcaaatcatgcaccctgtaatttggcatataatttagtttctgaagtgtgcactgccatttctttatactt...
species | Oryza sativa |
transcript | LOC_Os08g10608.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGGAAGAATATTGGCCTTGGCTTCAAGACACCCCGGGAAGCAATTGAAG GGACCTACATCGATAAGAAATGCCCATTCACTGGAACTGTCTCTATCAGAGEST: gi|33659206|gb|CF281819.1|CF281819
genomic: CTGGAAGAATATTGGCCTTGGCTTCAAGACACCCCGGGAAGCAATTGAAGgtaataaata ... tctgtttcagGGACCTACATCGATAAGAAATGCCCATTCACTGGAACTGTTTCTATCAGAG
EST: CTGGAAGAATATTGGCCTTGGCTTCAAGACACCCCGGGAAGCAATTGAAG GGACCTACATCGATAAGAAATGCCCATTCACTGGAACTGTTTCTATCAGAGEST: gi|88592803|gb|CI710931.1|CI710931
genomic: CTGGAAGAATATTGGCCTTGGCTTCAAGACACCCCGGGAAGCAATTGAAGgtaataaata ... tctgtttcagGGACCTACATCGATAAGAAATGCCCATTCACTGGAACTGTTTCTATCAGAG
EST: CTGGAAGAATATTGGCCTTGGCTTCAAGACACCCCGGGAAGCAATTGAAG GGACCTACATCGATAAGAAATGCCCATTCACTGGAACTGTTTCTATCAGAGEST: gi|88429254|gb|CI690148.1|CI690148
genomic: CTGGAAGAATATTGGCCTTGGCTTCAAGACACCCCGGGAAGCAATTGAAGgtaataaata ... tctgtttcagGGACCTACATCGATAAGAAATGCCCATTCACTGGAACTGTTTCTATCAGAG
EST: CTGGAAGAATATTGGCCTTGGCTTCAAGACACCCCGGGAAGCAATTGAAG GGACCTACATCGATAAGAAATGCCCATTCACTGGAACTGTTTCTATCAGAGEST: gi|33661075|gb|CF292042.1|CF292042
genomic: CTGGAAGAATATTGGCCTTGGCTTCAAGACACCCCGGGAAGCAATTGAAGgtaataaata ... tctgtttcagGGACCTACATCGATAAGAAATGCCCATTCACTGGAACTGTTTCTATCAGAG
EST: CTGGAAGAATATTGGCCTTGGCTTCAAGACACCCCGGGAAGCAATTGAAG GGACCTACATCGATAAGAAATGCCCATTCACTGGAACTGTTTCTATCAGAGEST: gi|58602254|gb|CK012782.1|CK012782
genomic: CTGGAAGAATATTGGCCTTGGCTTCAAGACACCCCGGGAAGCAATTGAAGgtaataaata ... tctgtttcagGGACCTACATCGATAAGAAATGCCCATTCACTGGAACTGTTTCTATCAGAG
EST: CTGGAAGAATATTGGCCTTGGCTTCAAGACACCCCGGGAAGCAATTGAAG GGACCTACATCGATAAGAAATGCCCATTCACTGGAACTGTTTCTATCAGAGEST: gi|88587591|gb|CI705349.1|CI705349
genomic: CTGGAAGAATATTGGCCTTGGCTTCAAGACACCCCGGGAAGCAATTGAAGgtaataaata ... tctgtttcagGGACCTACATCGATAAGAAATGCCCATTCACTGGAACTGTTTCTATCAGAG
EST: CTGGAAGAATATTGGCCTTGGCTTCAAGACACCCCGGGAAGCAATTGAAG GGACCTACATCGATAAGAAATGCCCATTCACTGGAACTGTTTCTATCAGAGEST: gi|58601143|gb|CK011671.1|CK011671
genomic: CTGGAAGAATATTGGCCTTGGCTTCAAGACACCCCGGGAAGCAATTGAAGgtaataaata ... tctgtttcagGGACCTACATCGATAAGAAATGCCCATTCACTGGAACTGTTTCTATCAGAG
EST: CTGGAAGAATATTGGCCTTGGCTTCAAGACACCCCGGGAAGCAATTGAAG GGACCTACATCGATAAGAAATGCCCATTCACTGGAACTGTTTCTATCAGAGEST: gi|163918131|gb|EG713997.1|EG713997
genomic: CTGGAAGAATATTGGCCTTGGCTTCAAGACACCCCGGGAAGCAATTGAAGgtaataaata ... tctgtttcagGGACCTACATCGATAAGAAATGCCCATTCACTGGAACTGTTTCTATCAGAG
EST: CTGGAAGAATATTGGCCTTGGCTTCAAGACACCCCGGGAAGCAATTGAAG GGACCTACATCGATAAGAAATGCCCATTCACTGGAACTGTTTCTATCAGAGEST: gi|58596143|gb|CK006671.1|CK006671
genomic: CTGGAAGAATATTGGCCTTGGCTTCAAGACACCCCGGGAAGCAATTGAAGgtaataaata ... tctgtttcagGGACCTACATCGATAAGAAATGCCCATTCACTGGAACTGTTTCTATCAGAG
EST: CTGGAAGAATATTGGCCTTGGCTTCAAGACACCCCGGGAAGCAATTGAAG GGACCTACATCGATNAGAAATGCCCATTCACTGGAACTGTTTCTATCAGAGEST: gi|163918124|gb|EG713162.1|EG713162
genomic: CTGGAAGAATATTGGCCTTGGCTTCAAGACACCCCGGGAAGCAATTGAAGgtaataaata ... tctgtttcagGGACCTACATCGATAAGAAATGCCCATTCACTGGAACTGTTTCTATCAGAG
EST: CTGGAAGAATATTGGCCTTGGCTTCAAGACACCCCGGGAAGCAATTGAAG GGACCTACATCGATAAGAAATGCCCATTCACTGGAACTGTTTCTATCEST: gi|163917913|gb|EG713965.1|EG713965
genomic: CTGGAAGAATATTGGCCTTGGCTTCAAGACACCCCGGGAAGCAATTGAAGgtaataaata ... tctgtttcagGGACCTACATCGATAAGAAATGCCCATTCACTGGAACTGTTTCTATC
EST: CTGGAAGAATATTGGCCTTGGCTTCAAGACACCCCGGGAAGCAATTGAAG GGACCTACATCGATAAGAAATGCCCATTCACTGGAACTGTTTCTATCAGAG
genomic: CTGGAAGAATATTGGCCTTGGCTTCAAGACACCCCGGGAAGCAATTGAAGgtaataaata ... tctgtttcagGGACCTACATCGATAAGAAATGCCCATTCACTGGAACTGTTTCTATCAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAAAGAAATCTGGCAAAGGGAAGAAGCCTGGCAAGGGAGGTAACCGCTTCTGGAAGAATATTGGCCTTGGCTTCAAGACACCCCGGGAAGCAATTGAAGgtaataaataaattcttccctgtaactatgcaaatcatgcaccctgtaatttggcatataatttagtttctgaagtgtgcactgccatttctttatactt
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa