1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TAAAAATATTGCTCATCTGACTCACGTTAGTGAGATGGAGAAGAAGTGTGAATCTTTGGCCAGAATCACCACTATTTTGAAAGATGTAATTCAAAACAAGgtaattgaagtcacaaattgttctttcacttgtctttcttgggattaccagttattcagattgattgtgtgaagaacgttccgcctgcatctctgccctatacgttatccgattgtacaaacctatgcatctgaaataatgatcctttttccatcag
species | Oryza sativa |
transcript | LOC_Os08g10410.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AATCTTTGGCCAGAATCACCACTATTTTGAAAGATGTAATTCAAAACAAG GATCGCATTATTGCTCGACTGCAACAACCTTACTCCCTCGATTGCATTCCTEST: gi|88336875|gb|CI626955.1|CI626955
genomic: AATCTTTGGCCAGAATCACCACTATTTTGAAAGATGTAATTCAAAACAAGgtaattgaag ... tttccatcagGATCGCATTATTGCTCGACTGCAACAACCTTACTCCCTCGATTGCATTCCT
EST: AATCTTTGGCCAGAATCACCACTATTTTGAAAGATGTAATTCAAAACAAG GATCGCATTATEST: gi|218479983|gb|FG957518.1|FG957518
genomic: AATCTTTGGCCAGAATCACCACTATTTTGAAAGATGTAATTCAAAACAAGgtaattgaag ... tttccatcagGATCGCATTAT
EST: AATCTTTGGCCAGAATCACCACTATTTTGAAAGATGTAATTCAAAACAAG GATCGCATTATTGCTCGACTGCAACAACCTTACTCCCTCGATTGCATTCCTEST: gi|88372600|gb|CI610923.1|CI610923
genomic: AATCTTTGGCCAGAATCACCACTATTTTGAAAGATGTAATTCAAAACAAGgtaattgaag ... tttccatcagGATCGCATTATTGCTCGACTGCAACAACCTTACTCCCTCGATTGCATTCCT
EST: AATCTTTGGCCAGAATCACCACTATTTTGAAAGATGTAATTCAAAACAAG GATCGCATTATTGCTCGACTGCAACAAEST: gi|88313765|gb|CI597396.1|CI597396
genomic: AATCTTTGGCCAGAATCACCACTATTTTGAAAGATGTAATTCAAAACAAGgtaattgaag ... tttccatcagGATCGCATTATTGCTCGACTGCAACAA
EST: AATCTTTGGCCAGAATCACCACTATTTTGAAAGATGTAATT-AAAACAAG GATCGCATTATTGCTCGACTGGAACAACCTTACTCCCTCGATTGGATTCCT
genomic: AATCTTTGGCCAGAATCACCACTATTTTGAAAGATGTAATTCAAAACAAGgtaattgaag ... tttccatcagGATCGCATTATTGCTCGACTGCAACAACCTTACTCCCTCGATTGCATTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAAAATATTGCTCATCTGACTCACGTTAGTGAGATGGAGAAGAAGTGTGAATCTTTGGCCAGAATCACCACTATTTTGAAAGATGTAATTCAAAACAAGgtaattgaagtcacaaattgttctttcacttgtctttcttgggattaccagttattcagattgattgtgtgaagaacgttccgcctgcatctctgccctatacgttatccgattgtacaaacctatgcatctgaaataatgatcctttttccatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG