1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CCGGCGACGGCCTCTCCGGCGACGACCAGGACCCCAACCAGCGGCCGCGCAAGAAGCGTTACCACCGCCATACCCAGCACCAGATCCAAGAGATGGAAGCgtaagattaatttatcatttcatccctatgttttcaattctgagataattttcttctcccttgcaaatctttgtcagattgattaaatgttatgaatcctattcatcagttgatctttgtagattaagtaaatgtttgtgaattttgatcag
species | Oryza sativa |
transcript | LOC_Os08g08820.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGAAGCGTTACCACCGCCATACCCAGCACCAGATCCAAGAGATGGAAGC TTTCTTCAAGGAGTGCCCGCACCCAGACGACAAGCAGCGCAAGGAGCTGAGEST: gi|29667380|gb|CB663655.1|CB663655
genomic: AAGAAGCGTTACCACCGCCATACCCAGCACCAGATCCAAGAGATGGAAGCgtaagattaa ... ttttgatcagTTTCTTCAAGGAGTGCCCGCACCCAGACGACAAGCAGCGCAAGGAGCTGAG
EST: AAGAAGCGTTACCACCGCCATACCCAGCACCAGATCCAAGAGATGGAAGC TTTCTTCAAGGAGTGCCCGCACCCAGACGACAAGCAGCGCAAGGAGCTGAGEST: gi|29637184|gb|CB642193.1|CB642193
genomic: AAGAAGCGTTACCACCGCCATACCCAGCACCAGATCCAAGAGATGGAAGCgtaagattaa ... ttttgatcagTTTCTTCAAGGAGTGCCCGCACCCAGACGACAAGCAGCGCAAGGAGCTGAG
EST: AAGAAGCGTTACCACCGCCATACCCAGCACCAGATCCAAGAGATGGAAGC TTTCTTCAAGGAGTGCCCGCACCCAGACGACAAGCAGCGCAAGGAGCTGAG
genomic: AAGAAGCGTTACCACCGCCATACCCAGCACCAGATCCAAGAGATGGAAGCgtaagattaa ... ttttgatcagTTTCTTCAAGGAGTGCCCGCACCCAGACGACAAGCAGCGCAAGGAGCTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGGCGACGGCCTCTCCGGCGACGACCAGGACCCCAACCAGCGGCCGCGCAAGAAGCGTTACCACCGCCATACCCAGCACCAGATCCAAGAGATGGAAGCgtaagattaatttatcatttcatccctatgttttcaattctgagataattttcttctcccttgcaaatctttgtcagattgattaaatgttatgaatcctattcatcagttgatctttgtagattaagtaaatgtttgtgaattttgatcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG