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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCGAATTTGCTAATGGCATTGATATGCAAGGTCGTCTGAACCTGGAAAATAGGATTATAGATTCTGACGAGAGAGCGGTGTACCAGGAAGCACTACAGgcatgtgttcctttgttcctagttattgaggcaattttgtatgattgagttgtttttcttctacgttttctgaatcaaattggagagttgatttgataga...

Basic information

species Oryza sativa
transcript LOC_Os08g08220.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58667760|gb|CK056446.1|CK056446
EST:     CCAGGAAGCACTACAG                         ACATATTATCCAGGATAAAAGGGAAGATGATCTGCCTGAGGGTGTTCTGTC
genomic: CCAGGAAGCACTACAGgcatgtgttc ... tgttatacagA-ATATTATCCAGGATAAAAGGGAAGATGATCTGCCTGAGGGTGTTCTGTC
EST: gi|29619028|gb|CB624040.1|CB624040
EST:     ATAGGATTATAGATTCTGACGAGAGAGCGGTGTACCAGGAAGCACTACAG                         AATATTATCCAGGATAAAAGGGAAGATGATCTGCCTGAGGGTGTTCTGTCA
genomic: ATAGGATTATAGATTCTGACGAGAGAGCGGTGTACCAGGAAGCACTACAGgcatgtgttc ... tgttatacagAATATTATCCAGGATAAAAGGGAAGATGATCTGCCTGAGGGTGTTCTGTCA
EST: gi|29619027|gb|CB624039.1|CB624039
EST:     ATAGGATTATAGATTCTGACGAGAGAGCGGTGTACCAGGAAGCACTACAG                         AATATTATCCAGGATAAAAGGGAAGATGATCTGCCTGAGGGTGTTCTGTCA
genomic: ATAGGATTATAGATTCTGACGAGAGAGCGGTGTACCAGGAAGCACTACAGgcatgtgttc ... tgttatacagAATATTATCCAGGATAAAAGGGAAGATGATCTGCCTGAGGGTGTTCTGTCA