1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTACTGCCTAATCCAGGTGACTCCGTATCGAGCCTCAGTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAGgtaagtttatttttcctgtaaactttcagtatgcatttatcaatgtgttcttaccaggtttgactttgagttttgtgcag
species | Oryza sativa |
transcript | LOC_Os08g07960.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAG GTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTATAEST: gi|25799251|gb|CA755212.1|CA755212
genomic: GTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAGgtaagtttat ... ttttgtgcagGTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTATA
EST: GTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAG GTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTATAEST: gi|29681300|gb|CB677575.1|CB677575
genomic: GTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAGgtaagtttat ... ttttgtgcagGTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTATA
EST: GTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAG GTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTATAEST: gi|10794894|gb|AU108860.1|AU108860
genomic: GTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAGgtaagtttat ... ttttgtgcagGTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTATA
EST: GTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAG GTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCANCTATAEST: gi|29615879|gb|CB620891.1|CB620891
genomic: GTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAGgtaagtttat ... ttttgtgcagGTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTATA
EST: GTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAG GTGCGGTGCTGGGAGATTGTTGGGGGGAGTAGTCAACCAAAGGCATCTATAEST: gi|88394449|gb|CI605790.1|CI605790
genomic: GTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAGgtaagtttat ... ttttgtgcagGTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTATA
EST: GTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAG GTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTATAEST: gi|33793654|gb|CF322711.1|CF322711
genomic: GTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAGgtaagtttat ... ttttgtgcagGTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTATA
EST: GTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAG GTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTATAEST: gi|88417412|gb|CI579073.1|CI579073
genomic: GTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAGgtaagtttat ... ttttgtgcagGTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTATA
EST: GTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAG GTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTATAEST: gi|88356897|gb|CI620785.1|CI620785
genomic: GTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAGgtaagtttat ... ttttgtgcagGTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTATA
EST: GTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAG GTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTATAEST: gi|88394469|gb|CI605810.1|CI605810
genomic: GTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAGgtaagtttat ... ttttgtgcagGTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTATA
EST: GTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAG GTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTATAEST: gi|88399681|gb|CI583415.1|CI583415
genomic: GTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAGgtaagtttat ... ttttgtgcagGTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTATA
EST: GTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAG GTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTATAEST: gi|33795033|gb|CF323392.1|CF323392
genomic: GTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAGgtaagtttat ... ttttgtgcagGTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTATA
EST: GTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAG GTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTATAEST: gi|88397869|gb|CI583187.1|CI583187
genomic: GTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAGgtaagtttat ... ttttgtgcagGTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTATA
EST: GTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAG GTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTAEST: gi|58598341|gb|CK008869.1|CK008869
genomic: GTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAGgtaagtttat ... ttttgtgcagGTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTA
EST: TTTAGCCCAGAGAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAG GTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTATAEST: gi|88417428|gb|CI579089.1|CI579089
genomic: TTTAGCCCA-A-AGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAGgtaagtttat ... ttttgtgcagGTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTATA
EST: GTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAG GTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTATA
genomic: GTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAGgtaagtttat ... ttttgtgcagGTGCGGTGCTGGGAGATTGTTGGTGGGAGTAGTCAACCAAAGGCATCTATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACTGCCTAATCCAGGTGACTCCGTATCGAGCCTCAGTTTTAGCCCAAAGAGCAACCTTCTGGTGGCAACTTCCTGGGATAACCAGgtaagtttatttttcctgtaaactttcagtatgcatttatcaatgtgttcttaccaggtttgactttgagttttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG