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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCGCGACGGATTATGGCGTAGGCGTGGACTTGTGGAGCGCGGGATGTATCCTTGCTGAATTGCTCGCAGGGAAACCTATCATGCCTGGGCGGACCGAGgttagctacataatgatctgttattgttgtatagttatgctttagacaccttgtagcacatatctttcaaatattcagttcagcaccaaccaaagtttca...

Basic information

species Oryza sativa
transcript LOC_Os07g47180.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g47180.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM5G873277_T01 (Zea mays), 5'ss of exon 3
GGGCGCGACGGATTATGGCGTAGGCGTGGACTTGTGGAGCGCGGGATGTATCCTTGCTGAATTGCTCGCAGGGAAACCTATCATGCCTGGGCGGACCGAGgttagctacataatgatctgttattgttgtatagttatgctttagacaccttgtagcacatatctttcaaatattcagttcagcaccaaccaaagtttca--
||| |||||||||||||| || ||||| ||||||||||| || |||||||| || ||||||||||| || || || ||||| |||||||| ||||| ||||||||||||| |||| |      |||    ||| || | | | | | ||| | | ||    | |  |     ||| |           ||||| | | |   
GGGTGCGACGGATTATGGAGTTGGCGTAGACTTGTGGAGTGCAGGATGTATACTGGCTGAATTGCTGGCTGGAAAGCCTATTATGCCTGGACGGACTGAGgttagctacagaatgcttgaccgttgcatcata-ttctccctgaaataccatctggctatcagcacttgc-catttaaggttctgtttaccaaggctgcgaa

upper sequence: LOC_Os07g47180.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G333433_T01 (Zea mays), 5'ss of exon 3
GGGCGCGACGGATTATGGCGTAGGCGTGGACTTGTGGAGCGCGGGATGTATCCTTGCTGAATTGCTCGCAGGGAAACCTATCATGCCTGGGCGGACCGAGgttagctacataatgatctgttattgttgtatagttat--gctttagacaccttgtagcacatatctttcaaatattcagttcagcaccaaccaaagtttca
||| ||||| |||||||| || ||||| |||||||||||||| |||||||| || ||||||||||| || || || || || |||||||| ||||| ||||||||||| ||| ||       | |    | | | |||  ||  | | ||  |||  |    | | |  |||   |   |          |||   |  || 
GGGTGCGACAGATTATGGAGTTGGCGTCGACTTGTGGAGCGCAGGATGTATACTAGCTGAATTGCTGGCTGGAAAGCCCATTATGCCTGGACGGACTGAGgttagctatatattgtctctgaaataccatcttgctatcagcactcgccat-ttgaggattctgtttaccaaggctgtggaatttttgttaccgggggatc-

upper sequence: LOC_Os07g47180.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA17G02580.1 (Glycine max), 5'ss of exon 3
GGGCGCGACGGATTATGGCGTAGGCGTGGACTTGTGGAGCGCGGGATGTATCCTTGCTGAATTGCTCGCAGGGAAACCTATCATGCCTGGGCGGACCGAGgttagctacataatgatctgttattgttgtatagttatgctttagacacct--tgtag-cacatatctttcaaat--------attcagttcagcaccaaccaaagtttca----------------------------------------
 || || || || ||||| ||||| |||||| | ||||| || || || || |||||||||||| | || ||||| ||||| |||||||| || |||||||| | ||  | ||||||   || |  || |||| ||   ||     ||     ||||  ||| |  |||   |||        |||  |||   |       || ||||                                          
TGGAGCCACTGACTATGGTGTAGGAGTGGACCTCTGGAGTGCTGGCTGCATTCTTGCTGAATTGTTGGCTGGGAAGCCTATTATGCCTGGTCGAACCGAGgtaatcttta-aatgattaatt-tcattttataatttctctaagagcataagatgtattcactttacttgtcaatggtgcaagattttgttgctcgtgttagaaggtttgtgcttctgatttggttgatatatatccactgtgcttcacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29675016|gb|CB671291.1|CB671291
EST:     TCCTTGCTGAATTGCTCGCAGGGAAACCTATCATGCCTGGGCGGACCGAG                         GTGGAACAGCTGCATAAAATTTTTAAGTTGTGTGGATCCCCCACAGAAGAA
genomic: TCCTTGCTGAATTGCTCGCAGGGAAACCTATCATGCCTGGGCGGACCGAGgttagctaca ... atccttttagGTGGAACAGCTGCATAAAATTTTTAAGTTGTGTGGTTCCCCCACAGAAGAA