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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGATGTGAACATAATGAAGAACATGGGCTTTGATGCGTATAGATTTTCGATCTCTTGGTCAAGAATTTTCCCAAgtatgtggattatgtctgtacctgcagcagttctttttgttgttgttggttggatcagtggagtttgtgatttggagttttctataaaaatttag

Basic information

species Oryza sativa
transcript LOC_Os07g46280.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g46280.3 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G148176_T01 (Zea mays), 5'ss of exon 3
GAAGATGTGAACATAATGAAGAACATGGGCTTTGATGCGTATAGATTTTCGATCTCTTGGTCAAGAATTTTCCCAAgtatgtggattatgtctgtacctgcagcagttctttttgttgttgttggttggatcagtggagtttgtgatttggagttttctataaaaatttag---------
|||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| || ||||||||| ||| |||   |   |      ||| || | ||  ||               || ||   ||||||| |||  | ||||| | | |  | || ||          
GAAGATGTGAACATAATGAAGAACATGGGCTTTGATGCGTACCGATTTTCGATCTCTTGGTCGAGGATTTTCCCAGgtaggtgtgctccatt-----ctgtagaattttctt---------------gggtccaaggagtttctgaggtagagttctgtgtgtatatataatatacgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29642035|gb|CB647042.1|CB647042
EST:     GGGCTTTGATGCGTATAGATTTTCGATCTCTTGGTCAAGAATTTTCCCAA                         ATGGGACTGGGATGGTGAACCAGGAAGGAGTTGATTATTACAACAGGTTAA
genomic: GGGCTTTGATGCGTATAGATTTTCGATCTCTTGGTCAAGAATTTTCCCAAgtatgtggat ... aaaaatttagATGGGACTGGGATGGTGAACCAGGAAGGAGTTGATTATTACAACAGGTTAA
EST: gi|29664412|gb|CB660687.1|CB660687
EST:     GGGCTTTGATGCGTATAGATTTTCGATCTCTTGGTCAAGAATTTTCCCAA                         ATGGGACTGGGATGGTGAACCAGGAAGGAGTTGATTATTACAACAGGTTAA
genomic: GGGCTTTGATGCGTATAGATTTTCGATCTCTTGGTCAAGAATTTTCCCAAgtatgtggat ... aaaaatttagATGGGACTGGGATGGTGAACCAGGAAGGAGTTGATTATTACAACAGGTTAA
EST: gi|33653413|gb|CF276027.1|CF276027
EST:     GGCTTTGATGCGTATANGATTTTCGATCTCTTGGTCAAGAATTTTCCCAA                         ATGGGGACTGGGATGGTGAACCAGGAAGGAGTTGATTATTACAACAGGTTA
genomic: GGCTTTGATGCGTATA-GATTTTCGATCTCTTGGTCAAGAATTTTCCCAAgtatgtggat ... aaaaatttagATGGG-ACTGGGATGGTGAACCAGGAAGGAGTTGATTATTACAACAGGTTA
EST: gi|88397812|gb|CI583130.1|CI583130
EST:     GGGCTTTGATGCGTATAGATTTTCGATCTCTTGGTCAAGAATTTTACCAA                         ATGGGACTGGGATGGTGAACC
genomic: GGGCTTTGATGCGTATAGATTTTCGATCTCTTGGTCAAGAATTTTCCCAAgtatgtggat ... aaaaatttagATGGGACTGGGATGGTGAACC
EST: gi|58673231|gb|CK061917.1|CK061917
EST:     GGGCTTTGATGCGTATAGATTTTCGATCTCTTGGTCAAGAATTTTCCCAA                         ATGGGACTGGGATGGTGAACCAGGAAGGAGTTGATTATTACAACAGGTTAA
genomic: GGGCTTTGATGCGTATAGATTTTCGATCTCTTGGTCAAGAATTTTCCCAAgtatgtggat ... aaaaatttagATGGGACTGGGATGGTGAACCAGGAAGGAGTTGATTATTACAACAGGTTAA
EST: gi|44664928|gb|CR278362.1|CR278362
EST:     GGGCTTTGATGCGTATAGATTTTCGATCTCTTGGTCAAGAATTTTCCCAA                         ATGGGACTGGGATGGTGAACCAGGAAGGAGTTGATTATTACAACAGGTTAA
genomic: GGGCTTTGATGCGTATAGATTTTCGATCTCTTGGTCAAGAATTTTCCCAAgtatgtggat ... aaaaatttagATGGGACTGGGATGGTGAACCAGGAAGGAGTTGATTATTACAACAGGTTAA