1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGATGTGACAAAAAGTGGAGATGCACGTGTTGGTTTGGTGGGCTTTCCTTCAGTTGGAAAATCAACATTGTTGAACAAGCTGACAGGAACATTTTCAGAGgtgctgtacgaatgctatctacatattcatttacgaggatcttcccccacttagttgagcaccctttgtattagataaacgcacacacacatttttatgc...
species | Oryza sativa |
transcript | LOC_Os07g43470.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAGTTGGAAAATCAACATTGTTGAACAAGCTGACAGGAACATTTTCAGAG GTTGCAGCCTACGAATTCACAACTTTAACATGTAT-CCTGGAGATATAATGEST: gi|88403519|gb|CI575403.1|CI575403
genomic: CAGTTGGAAAATCAACATTGTTGAACAAGCTGACAGGAACATTTTCAGAGgtgctgtacg ... gattcaacagGTTGCAGCCTACGAATTCACAACTTTAACATGTATTCCTGGAGTTATAATG
EST: CAGTTGGAAAATCAACATTGTTGAACAAGCTGACAGGAACATTTTCAGAG GTTGCAGCCTACGAATTCACAACTTTAACATGTATTGCTGGAGATATAATGEST: gi|88382980|gb|CI683078.1|CI683078
genomic: CAGTTGGAAAATCAACATTGTTGAACAAGCTGACAGGAACATTTTCAGAGgtgctgtacg ... gattcaacagGTTGCAGCCTACGAATTCACAACTTTAACATGTATTCCTGGAGTTATAATG
EST: CAGTTGGAAAATCAACATTGTTGAACAAGCTGACAGGAACATTTTCAGAG GTTGCAGCCTACGAATTCACAACTTTAACEST: gi|27410184|gb|CA923254.1|CA923254
genomic: CAGTTGGAAAATCAACATTGTTGAACAAGCTGACAGGAACATTTTCAGAGgtgctgtacg ... gattcaacagGTTGCAGCCTACGAATTCACAACTTTAAC
EST: CAGTTGGAAAATCAACATTGTTGAACAAGCTGACAGGAGCATTTTCAGAG GTTGCAGCCTACGAATTCACAACTTTAACATGTATTCCTGGAGTTATAATGEST: gi|9865251|gb|AU101001.1|AU101001
genomic: CAGTTGGAAAATCAACATTGTTGAACAAGCTGACAGGAACATTTTCAGAGgtgctgtacg ... gattcaacagGTTGCAGCCTACGAATTCACAACTTTAACATGTATTCCTGGAGTTATAATG
EST: CAGTTGGAAAATCAACATTGTTGAACAAGCTGACAGGAACATTTTCAGAG GTTGCAGCCTACGAATTCACAACTTTAACATGTATTCCTGGGGTTATAATGEST: gi|88299221|gb|CI570191.1|CI570191
genomic: CAGTTGGAAAATCAACATTGTTGAACAAGCTGACAGGAACATTTTCAGAGgtgctgtacg ... gattcaacagGTTGCAGCCTACGAATTCACAACTTTAACATGTATTCCTGGAGTTATAATG
EST: AGCTTGGAAAATCAACATTGTTGAACAAGCTGACAGGAACATTTTCAGAG GTTGCAGC-TACGAATTCACAACTTTAACATGTATTCCTGGAGTTATAATGEST: gi|9865250|gb|AU101000.1|AU101000
genomic: AG-TTGGAAAATCAACATTGTTGAACAAGCTGACAGGAACATTTTCAGAGgtgctgtacg ... gattcaacagGTTGCAGCCTACGAATTCACAACTTTAACATGTATTCCTGGAGTTATAATG
EST: CAGTTGGAAAATCAACATTGTTGAACAAGCTGACAGGAACATTTTCAGAG GTTGCAGCCTACGAATTCACAACTTTAACATGTATTCCTGGAGTTATAATGEST: gi|88332618|gb|CI651778.1|CI651778
genomic: CAGTTGGAAAATCAACATTGTTGAACAAGCTGACAGGAACATTTTCAGAGgtgctgtacg ... gattcaacagGTTGCAGCCTACGAATTCACAACTTTAACATGTATTCCTGGAGTTATAATG
EST: CAGTTGGAAAATCAACATTGTTGAACAAGCTGACAGGAACATTTTCAGAG GTTGCAGCCTACGAATTCACA
genomic: CAGTTGGAAAATCAACATTGTTGAACAAGCTGACAGGAACATTTTCAGAGgtgctgtacg ... gattcaacagGTTGCAGCCTACGAATTCACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGTGACAAAAAGTGGAGATGCACGTGTTGGTTTGGTGGGCTTTCCTTCAGTTGGAAAATCAACATTGTTGAACAAGCTGACAGGAACATTTTCAGAGgtgctgtacgaatgctatctacatattcatttacgaggatcttcccccacttagttgagcaccctttgtattagataaacgcacacacacatttttatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccccac