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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGAGCTCTACGCCGAGAAGGTGAACAACCGCGGCCTCTGCGCCATCGCCCAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctccatcctgaaactcgcgttccttagatattggtatagcagcatgtcatcttcacagcaaccggctgcttgttcgtgccagaattgtgttcga...

Basic information

species Oryza sativa
transcript LOC_Os07g41750.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g41750.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G093902_T02 (Zea mays), 5'ss of exon 3
TCGAGCTCTACGCCGAGAAGGTGAACAACCGCGGCCTCTGCGCCATCGCCCAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctcca---tcctgaaactcgcgttccttagatattggtatagcagcatgtcatcttcacagcaaccggctgcttgttcgtgccagaattgtgttcga
| ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| || ||||| || ||||| ||||||||  || |      |||  |   | |    ||   || ||  |||    |    |  ||||    |     | ||  | ||   |  || |   | | ||| 
TTGAGCTCTACGCAGAGAAGGTGAACAACCGTGGCCTCTGCGCCATTGCCCAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcacttattccctacattgcacaacactgctatgttaatatgat-gtgcatt-tcttagttgttgtagacttgtagtcactatcacagcag-gctcgg

upper sequence: LOC_Os07g41750.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA16G33240.1 (Glycine max), 5'ss of exon 3
TCGAGCTCTACGCCGAGAAGGTGAACAACCGCGGCCTCTGCGCCATCGCCCAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctccatcctgaaactcgcgt-tccttagatattggtatagcagcatgtcatc--ttcacagcaaccggctgcttgttcgtgccagaattgtgttcga
||||||| || || |||||||| |||||| | ||| | || ||||| || |||||||||||||| ||||||||||||||||| |||||||| ||  | ||||  |     ||       ||   |  | |||| ||||  |   || |   |  | |   ||   |  ||   |    ||  | |    |   || ||||   
TCGAGCTTTATGCTGAGAAGGTCAACAACAGAGGCTTGTGTGCCATTGCTCAGGCCGAGTCGCTTCGCTACAAGCTCCTCGGCGGCCTCGCTGTTCGCAGgt-ataacatattactctgctaatgcattcttatatatcaggcaaggattctagctttggttattatgaatttgtacattacttgcttaatgtttatgttt--

upper sequence: LOC_Os07g41750.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA09G28440.1 (Glycine max), 5'ss of exon 3
TCGAGCTCTACGCCGAGAAGGTGAACAACCGCGGCCTCTGCGCCATCGCCCAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgtt--gtgctccatcctgaaactcgcgttccttagatattggtatagcagcatgtcatcttcacagcaaccggctgcttgttcgtgccagaattgtgttcga--
||||||| || || |||||||| |||||| | |||||||| ||||| || |||||||||||||| ||||||||||| |||||||||||||| ||  | ||||          |  |||  | | || ||| |    | |  ||   |     | |||| |   ||   |      | ||  |  |  |  | ||||     |  
TCGAGCTTTATGCTGAGAAGGTCAACAACAGAGGCCTCTGTGCCATTGCTCAGGCCGAGTCGCTTCGCTACAAGCTTCTCGGTGGCCTCGCTGTTCGCAGgtataacatgttactctgctaat-gcattcttctagttt--gtgatgtgatttatcat-taggcaaggattttaggtttagttattacgaatttgttgattact

upper sequence: LOC_Os07g41750.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA16G33230.1 (Glycine max), 5'ss of exon 3
TCGAGCTCTACGCCGAGAAGGTGAACAACCGCGGCCTCTGCGCCATCGCCCAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgct-ccatcctgaaactcgcgttccttagatattgg--tatagcagcatgtcatcttcacagcaaccggctgcttgttcgtgccagaattgtgttcga
||||||| || || |||||||| |||||| | ||||| || ||||| || |||||||||||||| ||||||||||| |||||||||||||||||  | ||||  |  |   |  ||| || |    |   ||  ||| |      ||  | | ||  ||||| |   ||   | |     |   | |    |||| | ||   
TCGAGCTTTATGCTGAGAAGGTCAACAACAGAGGCCTGTGTGCCATTGCTCAGGCCGAGTCGCTTCGCTACAAGCTTCTCGGTGGCCTCGCCGTTCGCAGgtaattatattactctgcaaattcattcatttgtataatatatcttaatatcttgatatcttaatttcagatgtcattaggcatgggttttaattttatt---

upper sequence: LOC_Os07g41750.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA20G21190.1 (Glycine max), 5'ss of exon 3
TCGAGCTCTACGCCGAGAAGGTGAACAACCGCGGCCTCTGCGCCATCGCCCAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgt-tgtgc-tccatcctgaaactcgcgttccttagatattggtatagcagcatgtcatcttcacagcaaccggctgcttgttcgtgccagaattg-tgttcga-
| || || || || || ||||| |||||  | || || ||||| || || ||||| ||||| ||||||||||||||||| |||||||| || ||  | |||| | ||| | | |  |   | |   |||  |   | | || |||| |    | |    |||  ||       |    |   |    |   || | |||| || 
TTGAACTTTATGCTGAAAAGGTCAACAATAGGGGTCTTTGCGCTATAGCACAGGCTGAGTCTCTCCGCTACAAGCTCCTTGGTGGCCTAGCTGTGCGCAGgtatatgcattcttgtttttattgttgtttttactaaaatgatatacc----tattcatttcttagttgtttacattgtagacaaatcttgatagctgttggaa

upper sequence: LOC_Os07g41750.1 (Oryza sativa), 5'ss of exon 3
lower sequence: AT3G53870.1 (Arabidopsis thaliana), 5'ss of exon 3
TCGAGCTCTACGCCGAGAAGGTGAACAACCGCGGCCTCTGCGCCATCGCCCAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctccatcctgaaactcgcgttccttag-atattggtatagcagcatgtcatcttcacagcaaccggctgcttgttcgtgccagaattgtgttcga----
| ||||| || ||||||||||| |||||| | || ||||| |||||||| ||||| |||||  | || |||||||| || ||||| ||||| ||  | ||||    |    | ||  |  |||  | |  |   |  ||| |  | |||  |    | |    ||  || |     |||     |  |  | ||| |   |    
TTGAGCTTTATGCCGAGAAGGTTAACAACAGAGGTCTCTGTGCCATCGCTCAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGgtacgacat--ttctctagttcgtttgctatgttactttgtttgatcagtttagtttatcattagagactgat---ttggataggttactagtgtatataagcat

upper sequence: LOC_Os07g41750.1 (Oryza sativa), 5'ss of exon 3
lower sequence: EDP07493 (Chlamydomonas reinhardtii), 5'ss of exon 3
TCGAGCTCTACGCCGAGAAGGTGAACAACCGCGGCCTCTGCGCCATCGCCCAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctccatcctgaaactcgcgttccttagatattggtatagcagcatgtcatcttcacagcaaccggctgcttgttcgtgccagaattgtgttcga---------
| ||||| ||||| |||||||| | | |||| || || |||||||||||||||||||||||||| ||||||||||| || |||||||| |||||  |  ||| | ||  |  |  | |    | |||     | |   ||| |||  | |    | |  ||   |  |     | |||   ||| ||     | |  |||         
TTGAGCTGTACGCTGAGAAGGTCAGCGACCGTGGTCTGTGCGCCATCGCCCAGGCCGAGTCGCTGCGCTACAAGCTGCTGGGTGGCCTGGCCGTGCGCCGgt-gagcagctgcgaggagagggtgttg---gggttgcggtgtagaggga----aacggcaggaccgcgaagcg-ttgggggtggcaagggagggcacgaaaccgcatt

upper sequence: LOC_Os07g41750.1 (Oryza sativa), 5'ss of exon 3
lower sequence: PP1S454_3V6.1 (Physcomitrella patens), 5'ss of exon 3
TCGAGCTCTACGCCGAGAAGGTGAACAACCGCGGCCTCTGCGCCATCGCCCAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgt----tgtgct-ccatcctgaaactcgcgttccttagatattggtatagcagcatgtcatcttcacagcaaccggctgctt---gttcgtgccagaattg----tgttcga----------------------------
| ||| | || |||||||||||||||||| | || || |||||||| || ||||| |||||||| || |||||||| || || || || || ||  | ||||    || | | |||| |    | |   |  | |    ||||  |  ||  |||  |    || |    | |   |    |   || | |  |||||| |    |||  ||                            
TTGAGTTGTATGCCGAGAAGGTGAACAACAGGGGTCTGTGCGCCATTGCTCAGGCTGAGTCGCTGCGGTACAAGCTTCTTGGAGGTCTTGCTGTGCGCAGgtgcgatgggttgccattcgtgtaattatgcccgt---gtattcat-cagttgcactttgatttgaatctagcttcccatgttaagtacttatcagaatcgatggtgtatgacgttttcttttttgtatgacgggtacag

upper sequence: LOC_Os07g41750.1 (Oryza sativa), 5'ss of exon 3
lower sequence: PP1S41_146V6.1 (Physcomitrella patens), 5'ss of exon 3
TCGAGCTCTACGCCGAGAAGGTGAACAACCGCGGCCTCTGCGCCATCGCCCAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctccatcctgaaactcgcgttccttagatattggtatagcagcatgtcatcttcacagcaaccggctgcttgttcgtgcca-gaattgtgttcga-----------------------------------------------------
| ||| | ||||| ||||||||||||||| | || || || ||||| ||||||||||| ||  | || |||||||||||||| || || || ||  | ||||| ||||   |  |   | | |  ||  ||    ||| | |||      |    |||| ||  ||  |  |   |   | |||    | |   || || |                                                     
TGGAGTTGTACGCTGAGAAGGTGAACAACAGGGGTCTGTGTGCCATTGCCCAGGCCGAATCCTTGCGATACAAGCTCCTCGGAGGTCTTGCGGTTCGCAGgtt-tgcttttttattggatttgttttgttttaggattaggatattcattttatttcttgactccagac--cctttcactggtgaagtggaaaatgctcaatgctggcttagggttttttttgctgatacgtattaaaaattgtggatttacag

upper sequence: LOC_Os07g41750.1 (Oryza sativa), 5'ss of exon 3
lower sequence: PP1S127_74V6.1 (Physcomitrella patens), 5'ss of exon 3
TCGAGCTCTACGCCGAGAAGGTGAACAACCGCGGCCTCTGCGCCATCGCCCAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgt-tgtgctccatcc----tgaaactcgcgttccttaga--tattggtatagcagcatgtcatcttcacagcaaccggctgcttgttcgtg--ccagaattgtgttcga----------------------------
| ||| | ||||||||||||||||||||||| || || |||||||| |||||||| |||||||| || ||||| ||||| ||||| ||||| ||  | |||| |||||  | |      |  |  | |   |  |  |   ||||| |  | || | ||  || |||   |       ||||  ||||      |||  |   ||||                              
TGGAGTTGTACGCCGAGAAGGTGAACAACCGGGGTCTGTGCGCCATTGCCCAGGCTGAGTCGCTGCGATACAAACTCCTGGGTGGTCTCGCTGTTCGCAGgtgtgtgcctcgtatctattagactttgtactaatccgcactattgcttgatcaccttg--attttctacgaggttaactgcgcgttcagagctcagcgtatcgttctgatgtgctgatcttaaatctgaacgctag

upper sequence: LOC_Os07g41750.1 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ34676 (Selaginella moellendorffii), 5'ss of exon 3
TCGAGCTCTACGCCGAGAAGGTGAACAACCGCGGCCTCTGCGCCATCGCCCAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctccatcctgaaactcgcgttccttagatattggtatagcagcatgtcatcttcacagcaaccggctgcttgttcgtgccagaattgtgttcga
| ||||| || |||||||||||||||||||| ||||||||||||||||| || ||||||||  | || ||||||||||| || || || |||||| ||||||| || |   || |     |   |  |||| |   |  |                                                            
TGGAGCTGTATGCCGAGAAGGTGAACAACCGTGGCCTCTGCGCCATCGCTCAAGCCGAGTCTTTGCGATACAAGCTCCTGGGAGGACTGGCCGTCCGAAGgtt-tgatttttctttcttttttgg--ccttggtgctcag------------------------------------------------------------

upper sequence: LOC_Os07g41750.1 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ31296 (Selaginella moellendorffii), 5'ss of exon 3
TCGAGCTCTACGCCGAGAAGGTGAACAACCGCGGCCTCTGCGCCATCGCCCAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctccatcctgaaactcgcgttccttagatattggta-tagcagcatgtcatcttcacagcaaccggctgcttgttcgtgccagaattgtgttcga
| ||||| || |||||||||||||||||||| ||||||||||||||||| || ||||||||  | || ||||||||||| || || || |||||| ||||||| || |   || |           |  || |   |||||  ||  ||      |  |   |||                                    
TGGAGCTGTATGCCGAGAAGGTGAACAACCGTGGCCTCTGCGCCATCGCTCAAGCCGAGTCTTTGCGATACAAGCTCCTGGGAGGACTGGCCGTCCGAAGgtt-tgatttttcttt---------cttttttggccttggtgctaagagttctctacttcgtcag------------------------------------

upper sequence: LOC_Os07g41750.1 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ34304 (Selaginella moellendorffii), 5'ss of exon 3
TCGAGCTCTACGCCGAGAAGGTGAACAACCGCGGCCTCTGCGCCATCGCCCAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctccatcctgaaactcgcgttccttagatattggta-tagcagcatgtcatcttcacagcaaccggctgcttgttcgtgccagaattgtgttcga
| ||||| || |||||||||||||||||||| ||||||||||||||||| || ||||||||  | || ||||||||||| || || || |||||| ||||||| || |   || |           |  || |   |||||  ||  ||      |  ||  |||                                    
TGGAGCTGTATGCCGAGAAGGTGAACAACCGTGGCCTCTGCGCCATCGCTCAAGCCGAGTCTTTGCGATACAAGCTCCTGGGAGGACTGGCCGTCCGAAGgtt-tgatttttcttt---------cttttttggccttggtgctaagagttctctactttgtcag------------------------------------

upper sequence: LOC_Os07g41750.1 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ31038 (Selaginella moellendorffii), 5'ss of exon 3
TCGAGCTCTACGCCGAGAAGGTGAACAACCGCGGCCTCTGCGCCATCGCCCAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctccatcctgaaactcgcgttccttagatattggtatagcagcatgtcatcttca-cagcaaccggctgcttgttcgtgccagaattgtgttcga
| ||||| || |||||||||||||||||||| ||||||||||||||||| || ||||||||  | || ||||||||||| || || || |||||| ||||||| || |   || |           |  || |   |||||       | | ||  ||||  |||                                    
TGGAGCTGTATGCCGAGAAGGTGAACAACCGTGGCCTCTGCGCCATCGCTCAAGCCGAGTCTTTGCGATACAAGCTCCTGGGAGGACTGGCCGTCCGAAGgtt-tgatttttcttt---------cttttttggccttggtgctaagacttctctacttcgtcag------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33661397|gb|CF292364.1|CF292364
EST:     CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAG                         GGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctcc ... cttttgccagGGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
EST: gi|86599610|gb|CI253595.1|CI253595
EST:     CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAG                         GGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctcc ... cttttgccagGGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
EST: gi|88983289|gb|CI028526.1|CI028526
EST:     GCCTCGCCGTCAGAAG                         GGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
genomic: GCCTCGCCGTCAGAAGgttgtgctcc ... cttttgccagGGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
EST: gi|86823017|gb|CI253952.1|CI253952
EST:     CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAG                         GGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctcc ... cttttgccagGGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
EST: gi|88209932|gb|CI209781.1|CI209781
EST:     GCTACAAGCTCCTCGGTGTCCTCGCCGTCAGAAG                         GGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
genomic: GCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctcc ... cttttgccagGGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
EST: gi|218502938|gb|FG945478.1|FG945478
EST:     CANGCCGAGTCGTTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAG                         GGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctcc ... cttttgccagGGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
EST: gi|87015933|gb|CI279685.1|CI279685
EST:     CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAG                         GGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctcc ... cttttgccagGGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
EST: gi|86416739|gb|CI030750.1|CI030750
EST:     CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAG                         GGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctcc ... cttttgccagGGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
EST: gi|86824581|gb|CI264913.1|CI264913
EST:     CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAG                         GGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctcc ... cttttgccagGGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
EST: gi|218493198|gb|FG958057.1|FG958057
EST:     CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAG                         GGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctcc ... cttttgccagGGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
EST: gi|86501649|gb|CI144282.1|CI144282
EST:     CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAG                         GGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctcc ... cttttgccagGGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
EST: gi|11443003|gb|BF430890.1|BF430890
EST:     CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAG                         GGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctcc ... cttttgccagGGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
EST: gi|58676042|gb|CK064729.1|CK064729
EST:     CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAG                         GGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctcc ... cttttgccagGGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
EST: gi|86416691|gb|CI030702.1|CI030702
EST:     CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAG                         GGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctcc ... cttttgccagGGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
EST: gi|88237087|gb|CI236936.1|CI236936
EST:     CAGGCCGTGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAG                         GGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctcc ... cttttgccagGGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
EST: gi|88962995|gb|CI025481.1|CI025481
EST:     CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAG                         GGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctcc ... cttttgccagGGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
EST: gi|88982856|gb|CI028269.1|CI028269
EST:     GCTCCTCGGTGGCCTCGCCGTCAGAAG                         GGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
genomic: GCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctcc ... cttttgccagGGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
EST: gi|88206670|gb|CI206519.1|CI206519
EST:     CTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAG                         GGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
genomic: CTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctcc ... cttttgccagGGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
EST: gi|88216681|gb|CI214781.1|CI214781
EST:     CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAG                         GGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctcc ... cttttgccagGGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
EST: gi|25801300|gb|CA757261.1|CA757261
EST:     CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAG                         GGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctcc ... cttttgccagGGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
EST: gi|2280569|gb|C25064.1|C25064
EST:     CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAG                         GGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctcc ... cttttgccagGGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
EST: gi|88209026|gb|CI208875.1|CI208875
EST:     TCGGTGGCCTCGCCGTCAGAAG                         GGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
genomic: TCGGTGGCCTCGCCGTCAGAAGgttgtgctcc ... cttttgccagGGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
EST: gi|88242074|gb|CI241923.1|CI241923
EST:     CTCGGTGGCCTCGCCGTCAGAAG                         GGCGTGCTATGTTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
genomic: CTCGGTGGCCTCGCCGTCAGAAGgttgtgctcc ... cttttgccagGGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
EST: gi|38477659|gb|CF961792.1|CF961792
EST:     CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAG                         GGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctcc ... cttttgccagGGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
EST: gi|218492225|gb|FG955391.1|FG955391
EST:     CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAG                         GGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctcc ... cttttgccagGGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
EST: gi|88995801|gb|CI037144.1|CI037144
EST:     CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAG                         GGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG
genomic: CAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctcc ... cttttgccagGGCGTGCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCGAGCTCTACGCCGAGAAGGTGAACAACCGCGGCCTCTGCGCCATCGCCCAGGCCGAGTCGCTCCGCTACAAGCTCCTCGGTGGCCTCGCCGTCAGAAGgttgtgctccatcctgaaactcgcgttccttagatattggtatagcagcatgtcatcttcacagcaaccggctgcttgttcgtgccagaattgtgttcga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC