1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGCACCGCAACATCATGAAGTTCTACACCTCCTGGGTCGACGTCTCCCGCCGCAACATCAACTTCATCACCGAGATGTTCACCTCCGGCACCCTCCGCCAgtaagcaaatcaaatctctctcccggttcatccacacgctgtaataacgctaacgcacgcctcaaagcccaatctcccaaaaggatgttcctttttcctg...
species | Oryza sativa |
transcript | LOC_Os07g38530.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGCAACATCAACTTCATCACCGAGATGTTCACCTCCGGCACCCTCCGCCA GTATAGGCAGAAGCACATGAGGGTGAACATATGGGCGGTGAAGCACTGGTGEST: gi|58658300|gb|CK046980.1|CK046980
genomic: CGCAACATCAACTTCATCACCGAGATGTTCACCTCCGGCACCCTCCGCCAgtaagcaaat ... tactgattagGTATAGGCAGAAGCACATGAGGGTGAACATATGGGCGGTGAAGCACTGGTG
EST: CGCAACATCAACTTCATCACCGAGATGTTCACCTCCGGCACCCTCCGCCA GTATAGGCAGAAGCACATGAGGGTGAACATATGGGCGGTGAAGCACTGGTGEST: gi|29629432|gb|CB634441.1|CB634441
genomic: CGCAACATCAACTTCATCACCGAGATGTTCACCTCCGGCACCCTCCGCCAgtaagcaaat ... tactgattagGTATAGGCAGAAGCACATGAGGGTGAACATATGGGCGGTGAAGCACTGGTG
EST: CGCAACATCAACTTCATCACCGAGATGTTCACCTCCGGCACCCTCCGCCA GTATAGGCAGAAGCACATGAGGGTGAACATATGGGCGGTGAAGCACTGGTGEST: gi|29622036|gb|CB627047.1|CB627047
genomic: CGCAACATCAACTTCATCACCGAGATGTTCACCTCCGGCACCCTCCGCCAgtaagcaaat ... tactgattagGTATAGGCAGAAGCACATGAGGGTGAACATATGGGCGGTGAAGCACTGGTG
EST: CGCAACATCAACTTCATCACCGAGATGTTCACCTCCGGCACCCTCCGCCA GTATAGGCAGAAGCACATGAGGGTGAACATATGGGCGGTGAAGCACTGGTGEST: gi|29629006|gb|CB634017.1|CB634017
genomic: CGCAACATCAACTTCATCACCGAGATGTTCACCTCCGGCACCCTCCGCCAgtaagcaaat ... tactgattagGTATAGGCAGAAGCACATGAGGGTGAACATATGGGCGGTGAAGCACTGGTG
EST: CGCAACATCAACTTCATCACCGAGATGTTCACCTCCGGCACCCTCCGCCA GTATAGGCAGAAGCACATGAGGGTGAACATATGGGCGGTGAAGCACTGGTG
genomic: CGCAACATCAACTTCATCACCGAGATGTTCACCTCCGGCACCCTCCGCCAgtaagcaaat ... tactgattagGTATAGGCAGAAGCACATGAGGGTGAACATATGGGCGGTGAAGCACTGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCACCGCAACATCATGAAGTTCTACACCTCCTGGGTCGACGTCTCCCGCCGCAACATCAACTTCATCACCGAGATGTTCACCTCCGGCACCCTCCGCCAgtaagcaaatcaaatctctctcccggttcatccacacgctgtaataacgctaacgcacgcctcaaagcccaatctcccaaaaggatgttcctttttcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG