1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GAATGTGCCTTCTGTGTCGTCGAATTCGCGGCTTTCGCCTCTTCCCCCTGAGCCCGCAGCTTTTGGGGCTACGGTGGATATCCCTCTTGACTCTTCCAAGgtttgtatgaatgtgtagtttatccgtctcagttgaactgcagctagactgcagtacagtagaggatctttcatggaatagtacctaatgtcgctttttactaatgtgtgatgtatggatactcag
species | Oryza sativa |
transcript | LOC_Os07g37740.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGCCCGCAGCTTTTGGGGCTACGGTGGATATCCCTCTTGACTCTTCCAAG GACCTGAAGAATAGGGAAAAEST: gi|58598584|gb|CK009112.1|CK009112
genomic: AGCCCGCAGCTTTTGGGGCTACGGTGGATATCCCTCTTGACTCTTCCAAGgtttgtatga ... ggatactcagGACCTGAAGAATAGGGAAAA
EST: AGCCCGCAGCTTTTGGGGCTACGGTGGATATCCCTCTTGACTCTTCCAAG GACCTGAAGAATAGGGAAAAGGAGCTGCAAGCTAGGGAAGCGGAATTGAACEST: gi|88362315|gb|CI608706.1|CI608706
genomic: AGCCCGCAGCTTTTGGGGCTACGGTGGATATCCCTCTTGACTCTTCCAAGgtttgtatga ... ggatactcagGACCTGAAGAATAGGGAAAAGGAGCTGCAAGCTAGGGAAGCGGAATTGAAC
EST: AGCCCGCAGCTTTTGGGGCTACGGTGGATATCCCTCTTGACTCTTCCAAG GACCTGAAGAATAGGGAAAAGGAGCTGCAAGCTAGGGAAGCGGAATTGAACEST: gi|7332504|gb|AU085850.1|AU085850
genomic: AGCCCGCAGCTTTTGGGGCTACGGTGGATATCCCTCTTGACTCTTCCAAGgtttgtatga ... ggatactcagGACCTGAAGAATAGGGAAAAGGAGCTGCAAGCTAGGGAAGCGGAATTGAAC
EST: AGCCCGCAGCTTTTGGGGCTACGGTGGATATCCCTCTTGACTCTTCCAAG GACCTGAAGAATAGGGAAAAGGAGCTGCAA-CTAGGGAAGCGGA
genomic: AGCCCGCAGCTTTTGGGGCTACGGTGGATATCCCTCTTGACTCTTCCAAGgtttgtatga ... ggatactcagGACCTGAAGAATAGGGAAAAGGAGCTGCAAGCTAGGGAAGCGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATGTGCCTTCTGTGTCGTCGAATTCGCGGCTTTCGCCTCTTCCCCCTGAGCCCGCAGCTTTTGGGGCTACGGTGGATATCCCTCTTGACTCTTCCAAGgtttgtatgaatgtgtagtttatccgtctcagttgaactgcagctagactgcagtacagtagaggatctttcatggaatagtacctaatgtcgctttttactaatgtgtgatgtatggatactcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA