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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAACCGTCTGCGTCAAGAAATAGAAGATCTTGAGAAAGATACAGGATACAAGTTGAGAGTTCTTGCACAAAATTATCCTGATACACCAGgtgctttttgcttctgttttattacatatagttatcctttgtttgtgttatctaattatacaatatatttatagatacatggtaacattgtgtggcaaca...

Basic information

species Oryza sativa
transcript LOC_Os07g34950.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g34950.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G022876_T01 (Zea mays), 5'ss of exon 3
GAAAACCGTCTGCGTCAAGAAATAGAAGATCTTGAGAAAGATACAGGATACAAGTTGAGAGTTCTTGCACAAAATTATCCTGATACACCAGgtgctttttgcttctgttttattacatatagttatcctttg-tttgtgttatctaattatacaatatatttatagatacatggtaacattgtgtggcaaca
||||||||| |||| ||||| |||||||| || |||||||||||||| |||||  || ||||||||||||||||||||||||||||||| ||||  ||||  ||    | |||    |||     |   ||| |||   || | | || |     |  ||| | || ||| |   | | | || ||      
GAAAACCGTTTGCGCCAAGAGATAGAAGACCTGGAGAAAGATACAGGGTACAAACTGCGAGTTCTTGCACAAAATTATCCTGATACACCTGgtgagttttttttactctatatatggtatgcccttggcttgctttccattgtttcatcactattttcattaaaagctacttaaaatcttggtatgcttgg-

upper sequence: LOC_Os07g34950.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G022876_T04 (Zea mays), 5'ss of exon 1
---------GAAAACCGTCTGCGTCAAGAAATAGAAGATCTTGAGAAAGATACAGGATACAAGTTGAGAGTTCTTGCACAAAATTATCCTGATACACCAGgtgctttttgcttctgttttattacatatagttatcctttg-tttgtgttatctaattatacaatatatttatagatacatggtaacattgtgtggcaaca
         ||||||||| |||| ||||| |||||||| || |||||||||||||| |||||  || ||||||||||||||||||||||||||||||| ||||  ||||  ||    | |||    |||     |   ||| |||   || | | || |     |  ||| | || ||| |   | | | || ||      
TGTTCTTAGGAAAACCGTTTGCGCCAAGAGATAGAAGACCTGGAGAAAGATACAGGGTACAAACTGCGAGTTCTTGCACAAAATTATCCTGATACACCTGgtgagttttttttactctatatatggtatgcccttggcttgctttccattgtttcatcactattttcattaaaagctacttaaaatcttggtatgcttgg-

upper sequence: LOC_Os07g34950.2 (Oryza sativa), 5'ss of exon 3
lower sequence: AT5G52970.1 (Arabidopsis thaliana), 5'ss of exon 3
GAAAACCGTCTGCGTCAAGAAATAGAAGATCTTGAGAAAGATACAGGATACAAGTTGAGAGTTCTTGCACAAAATTATCCTGATACACCAGgtgctttttgcttctgttttattacatatagttatcctttgtttgtgttatctaattatacaatatatttatagatacatggtaacattgtgtggcaaca
|| ||  |  |   ||||||||| |   ||||||||||||||||||||| ||||||||||||  | || ||||| ||||| | ||| || |||    | |     ||    |  |||||   ||   || | |    |||   || |||    | || | | |   |       |                
GAGAAGAGAATTGCTCAAGAAATCGCTAATCTTGAGAAAGATACAGGATTCAAGTTGAGAGTCTTGGCTCAAAACTATCCCGTTACCCCTGgtatgatatatgcttggaaaacaacatac--ttgatctctatagaagtt---tactta-gtgacatttctctgtgtttgcaacag---------------