1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGGTCATCCTCCTCCCTTTCGCCTTCGCCATGGAGGGGCCCAAGGTGTGGGCTGCCGGCTGGCAAAAAGCCGTCGCCGAGATCGGTCCAAACTTCGTCTGgtgagcctcacatgcttttctttgtaccacttctcaccgtttcactgtcacaaccatcacgtcagttgagatttttgggtatcaattgggcaaaaaattt...
species | Oryza sativa |
transcript | LOC_Os07g33954.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCTGCCGGCTGGCAAAAAGCCGTCGCCGAGATCGGTCCAAACTTCGTCTG GTGGGTGGCGGCGEST: gi|58587774|gb|CF986082.1|CF986082
genomic: GCTGCCGGCTGGCAAAAAGCCGTCGCCGAGATCGGTCCAAACTTCGTCTGgtgagcctca ... ggttttgtagGTGGGTGGCGGCG
EST: GCTGCCGGCTGGCAAAAAGCCGTCGCCGAGATCGGTCCAAACTTCGTCTG GTGGGTGTGCGGCGCAGAGTGTTGTTCTACCACTTGTACAACCAAGTGTCCEST: gi|58687050|gb|CK075737.1|CK075737
genomic: GCTGCCGGCTGGCAAAAAGCCGTCGCCGAGATCGGTCCAAACTTCGTCTGgtgagcctca ... ggttttgtagGTGGGTG-GCGGCGCAGAGTGT-GTTCTACCACTTGTACAACCAAGTGTCC
EST: GCTGCCGGCTGGCAAAAAGCCGTCGCCGAGATCGGTCCAAACTTCGTCTG GTGGGTGGCGGCGCAGAGTGTGTTCTACEST: gi|218501784|gb|FG956611.1|FG956611
genomic: GCTGCCGGCTGGCAAAAAGCCGTCGCCGAGATCGGTCCAAACTTCGTCTGgtgagcctca ... ggttttgtagGTGGGTGGCGGCGCAGAGTGTGTTCTAC
EST: GCTGCCGGCTGGCAAAAAGCCGTCGCCGAGATCGGTCCAAACTTCGTCTG GTGGGTGGCGGCGCAGAGTGTGTTEST: gi|58677768|gb|CK066455.1|CK066455
genomic: GCTGCCGGCTGGCAAAAAGCCGTCGCCGAGATCGGTCCAAACTTCGTCTGgtgagcctca ... ggttttgtagGTGGGTGGCGGCGCAGAGTGTGTT
EST: GCTGCCGGCTGGCAAAAAGCCGTCGCCGAGATCGGTCCAAACTTCGTCTG GTGGGTGGCGGCGCAGAGTGTGTTCTACCACTTGTACAACCAAGTGTCCTAEST: gi|27554106|gb|CA998006.1|CA998006
genomic: GCTGCCGGCTGGCAAAAAGCCGTCGCCGAGATCGGTCCAAACTTCGTCTGgtgagcctca ... ggttttgtagGTGGGTGGCGGCGCAGAGTGTGTTCTACCACTTGTACAACCAAGTGTCCTA
EST: GCTGCCGGCTGGCAAAAAGCCGTCGCCGAGATCGGTCCAAACTTCGTCTG GTGGGTGGCGGCGCANAGTGTGTTCTACCACTTGTACAACCAAGTGTCCTA
genomic: GCTGCCGGCTGGCAAAAAGCCGTCGCCGAGATCGGTCCAAACTTCGTCTGgtgagcctca ... ggttttgtagGTGGGTGGCGGCGCAGAGTGTGTTCTACCACTTGTACAACCAAGTGTCCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTCATCCTCCTCCCTTTCGCCTTCGCCATGGAGGGGCCCAAGGTGTGGGCTGCCGGCTGGCAAAAAGCCGTCGCCGAGATCGGTCCAAACTTCGTCTGgtgagcctcacatgcttttctttgtaccacttctcaccgtttcactgtcacaaccatcacgtcagttgagatttttgggtatcaattgggcaaaaaattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC