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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTTCAAAATGGTGCCAAGCATGGTTTTGGTAATGCTAAACGGCATGTTCTCATATCTCTTTCCTTTTATCCTGCTTTTATTTCCCCTCATGGTGTCATgtaaacctattggcctgttcagtccttccatacatatgttgaggagattttggtttgtctaagagaatattaccatcaatacataagtacatgttagtta...

Basic information

species Oryza sativa
transcript LOC_Os07g33100.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g33100.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G154574_T01 (Zea mays), 5'ss of exon 3
-------------------------------------------------------TACTTCAAA--ATGGTGCCAAGCATGGTTTTGGTAATGCTAAACGGCATGTTCTCATATCTCTTTCCT----TTTATCCTGCTTTTAT-TTCCCCTCATGGTGTCATgtaaacct--attggcctgttcagtccttccatacatatgttgaggagattttggtttgtctaagagaatattaccatcaatacataagtacatgttagtta
                                                       | | |  |   | |||| ||| ||||||| |||||||||||||||||| |||||| |||||||||  |    ||  || | | ||| |  |   || |   |  |||| |||  |  ||| |  || |  | |||   ||  |||                                                                
GTGATGATGATGATACAGGTTCAATAGAAGCACAGTATTTTGGAAAACAAGACTCTGCATGGAGCCAGGGTGTCAATCATGGTTCTGGTAATGCTAAACGgcaggttctcttatctcttttttcatcttgttcatacctttttacttttcttagattagcatgcaaatttttatttgtttgatgggccctgaaatggata----------------------------------------------------------------

upper sequence: LOC_Os07g33100.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G154574_T03 (Zea mays), 5'ss of exon 3
-TACTTCAAAATGGTGCCAAGCATGGTTTTGGTAATGCTAAACGGCA-TGTTCTCATATCTCTTTCCTTTTATCCTGCTTTTATTTCCCCTCATGGT----GTCATgtaaacctattggcctgttcagtccttccatacatatgttgaggagattttggtttgtctaagagaatattaccatcaatacataagtacatgttagtta
      |  | | |||   |  ||| |   |||       ||   || | || |   |       |  |  ||   ||     | ||   |||||||    || |||  || |    ||     | |   |||   |     |||| |     ||||  |||   ||    |  ||       |||   ||  |   || | |   
GGTGGACGTAGTCGTGATGATGATGATACAGGTTCAATAGAAGCACAGTATTTTGGAAAACAAGACTCTGCATGGAGCCAGGGTGTCAA-TCATGGTTCTGgtaatgctaaacggcaggttctcttatctcttttttcatcttgttcatacctttttacttttcttagattagcat----gcaaatttttatttgtttgatgggc-