1 5' 3' | 2 5' 3' | 3 5' 3' |
GATGTACAGCTATTTGAATATATCTATTAGTAAGAACATAGTTCCTGATGAGATCAAAGGGAGGGTGCTTCATCATTCCTTCCCTGTTTCCCTTTTCCTGgtaatttccttaatccttataccctggttcattctttaaatgtttctataatctgtaattgtgcttgagtgctaagatttctgtttgattacttctttac...
species | Oryza sativa |
transcript | LOC_Os07g32230.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGATCAAAGGGAGGGTGCTTCATCATTCCTTCTCTGTTTCCCTTTTCCTG CCCCGCAGTGTTCGATTGGAGCATAAAACACTGAAGCTTCTGAAGTACTGGEST: gi|33691746|gb|CF319985.1|CF319985
genomic: AGATCAAAGGGAGGGTGCTTCATCATTCCTTCCCTGTTTCCCTTTTCCTGgtaatttcct ... gctatggcagCCCCGCAATGTTCGATTGGAGCATAAAACACTGAAGCTTCTGAAGTACTGG
EST: AGATCAAAGGGAGGGTGCTTCATCATTCCTTCCCTGTTTCCCTTTTCCTG CCCCGCAATGTTCGATTGGAGCATAAAACACTGAAGCTTCTGAAGTACTGGEST: gi|33680754|gb|CF308993.1|CF308993
genomic: AGATCAAAGGGAGGGTGCTTCATCATTCCTTCCCTGTTTCCCTTTTCCTGgtaatttcct ... gctatggcagCCCCGCAATGTTCGATTGGAGCATAAAACACTGAAGCTTCTGAAGTACTGG
EST: AGATCAAAGG-AGGGTGCTTCATCATTCCTTCCCTGTTTCCCTTTTCCTG CCCCGCAATGTTCGATTGGAGCATAAAACACTGAAGCTTCTGAAGTACTGGEST: gi|58686677|gb|CK075364.1|CK075364
genomic: AGATCAAAGGGAGGGTGCTTCATCATTCCTTCCCTGTTTCCCTTTTCCTGgtaatttcct ... gctatggcagCCCCGCAATGTTCGATTGGAGCATAAAACACTGAAGCTTCTGAAGTACTGG
EST: AGATCAAAGGGAGGGTGCTTCATCATTCCTTCCCTGTTTCCCTTTTCCTG CCCCGCAATGTTCGATTGGAGCATAAAACACTGAAGCTTCTGAAGTACTGGEST: gi|33682368|gb|CF310607.1|CF310607
genomic: AGATCAAAGGGAGGGTGCTTCATCATTCCTTCCCTGTTTCCCTTTTCCTGgtaatttcct ... gctatggcagCCCCGCAATGTTCGATTGGAGCATAAAACACTGAAGCTTCTGAAGTACTGG
EST: AGATCAAAGG-AGGGTGCTTCATCATTCCTTCCCTGTTTCCCTTTTCCTG CCCCGCAATGTTCGATTGGAGCATAAAACACTGAAGCTTCTGAAGTACTGG
genomic: AGATCAAAGGGAGGGTGCTTCATCATTCCTTCCCTGTTTCCCTTTTCCTGgtaatttcct ... gctatggcagCCCCGCAATGTTCGATTGGAGCATAAAACACTGAAGCTTCTGAAGTACTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGTACAGCTATTTGAATATATCTATTAGTAAGAACATAGTTCCTGATGAGATCAAAGGGAGGGTGCTTCATCATTCCTTCCCTGTTTCCCTTTTCCTGgtaatttccttaatccttataccctggttcattctttaaatgtttctataatctgtaattgtgcttgagtgctaagatttctgtttgattacttctttac
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