Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTGGAAAAGAGCTTGAGACCTCCAAGgttatgtccttgaaatatatcccactttattgagaccattattgtcttgtcctgactttctagtttgtcattttctctttcag

Basic information

species Oryza sativa
transcript LOC_Os07g22720.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88345753|gb|CI631021.1|CI631021
EST:     CCAGATTTCCTCAGCGCAAGCAACCTGCAAAAGAGCTTGAGACCTCCAAG                         TTGTCACTAGGACTTAATGGAAGCTACACTTGCAGGAGATCACCTAACAAC
genomic: CCAGATTTCCTCAGCGCAAGCAACCTGGAAAAGAGCTTGAGACCTCCAAGgttatgtcct ... tctctttcagTTGTCACTAGGACTTAATGGAAGCTACACTTGCAGGAGATCACCTAACAAC
EST: gi|117233831|gb|CT842341.1|CT842341
EST:     CCAGATTTCCTCAGCGCAAGCAACCTGGAAAAGAGCTTGAGACCTCCAAG                         TTGTCACTAGGACTTAATGGAAGCTACACTTGCAGGAGATCACCTAACAAC
genomic: CCAGATTTCCTCAGCGCAAGCAACCTGGAAAAGAGCTTGAGACCTCCAAGgttatgtcct ... tctctttcagTTGTCACTAGGACTTAATGGAAGCTACACTTGCAGGAGATCACCTAACAAC
EST: gi|88301479|gb|CI597172.1|CI597172
EST:     CCAGATTTCCTCAGCGCAAGCAACCTGGAAAAGAGCTTGAGACCTCCAAG                         TTGTCACTAGGACTTAATGGAAGCTACACTTGCAGGAGATCACCTAACAAC
genomic: CCAGATTTCCTCAGCGCAAGCAACCTGGAAAAGAGCTTGAGACCTCCAAGgttatgtcct ... tctctttcagTTGTCACTAGGACTTAATGGAAGCTACACTTGCAGGAGATCACCTAACAAC
EST: gi|88397241|gb|CI580751.1|CI580751
EST:     CCAGATTTCCTCAGCGCAAGCAACCTGGAAAAGAGCTTGAGACCTCCAAG                         TTGTCACTAGGACTTAATGGAAGCTACACTTGCAGGAGA
genomic: CCAGATTTCCTCAGCGCAAGCAACCTGGAAAAGAGCTTGAGACCTCCAAGgttatgtcct ... tctctttcagTTGTCACTAGGACTTAATGGAAGCTACACTTGCAGGAGA
EST: gi|88329570|gb|CI650024.1|CI650024
EST:     CCAGATTTCCTCAGCGCAAGCAACCTGGAAAAGAGCTTGAGACCTCCAAG                         TTGTCACCTAGGANTTAA
genomic: CCAGATTTCCTCAGCGCAAGCAACCTGGAAAAGAGCTTGAGACCTCCAAGgttatgtcct ... tctctttcagTTGTCAC-TAGGACTTAA
EST: gi|88345084|gb|CI628338.1|CI628338
EST:     CCAGATTTCCTCAGCGCAAGCAACCTGGAAAAGAGCTTGAGACCTCCAAG                         TTGTCACTAGGACTTAATGGAA
genomic: CCAGATTTCCTCAGCGCAAGCAACCTGGAAAAGAGCTTGAGACCTCCAAGgttatgtcct ... tctctttcagTTGTCACTAGGACTTAATGGAA
EST: gi|88394949|gb|CI607676.1|CI607676
EST:     CCAGATTTCCTCAGCGCAAGCAACCTGGAAAAGAGCTTGAGACCTCCAAG                         TTGTCACTAGGACTTAATGGAAGCTACACTTGGAGGAGATCACCTAAC
genomic: CCAGATTTCCTCAGCGCAAGCAACCTGGAAAAGAGCTTGAGACCTCCAAGgttatgtcct ... tctctttcagTTGTCACTAGGACTTAATGGAAGCTACACTTGCAGGAGATCACCTAAC
EST: gi|88337269|gb|CI629559.1|CI629559
EST:     CCAGATTTCCTCAGCGCAAGCAACCTGGAAAAGAGCTTGAGACCTCCAAG                         TTGTCACTAGGACTTAATGGA
genomic: CCAGATTTCCTCAGCGCAAGCAACCTGGAAAAGAGCTTGAGACCTCCAAGgttatgtcct ... tctctttcagTTGTCACTAGGACTTAATGGA
EST: gi|29636053|gb|CB641062.1|CB641062
EST:     CCAGATTTCCTCAGCGCAAGCAACCTGGAAAAGAGCTTGAGACCTCCAAG                         TTGTCACTAGGACTTAATGGAAGCTACACTTGCAGGAGATCACCTAACAAC
genomic: CCAGATTTCCTCAGCGCAAGCAACCTGGAAAAGAGCTTGAGACCTCCAAGgttatgtcct ... tctctttcagTTGTCACTAGGACTTAATGGAAGCTACACTTGCAGGAGATCACCTAACAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGCTGAGAAAAGAATTGGAGGTGCCAGATTTCCTCAGCGCAAGCAACCTGGAAAAGAGCTTGAGACCTCCAAGgttatgtccttgaaatatatcccactttattgagaccattattgtcttgtcctgactttctagtttgtcattttctctttcag

- - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT