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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAAgtaagacaaatgtttgttaaatctctaggctctagccaactgataataatgtaaagtatgctgttagtttggcagtcctacagcccccgtttgctgacaa...

Basic information

species Oryza sativa
transcript LOC_Os07g22640.4
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g22640.4 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G092129_T01 (Zea mays), 5'ss of exon 4
GTGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAAgtaagacaaatgtttgttaaatctctaggctctagccaactgata-ataatgtaaagtatgctgtta--gtttggcagtcctacagcccccgtttgctgacaa
|| |||||| ||||||||||||| |||||||| |||||||| ||||   |||||||   || | |  || | ||| ||  ||       |||  |  | |||     |  |   ||||   |||   |||  || | |  || | || | | | 
GTTAAATGGTTGAACAAGCATCTGAGCAAACTTTGGCCTTTTGTTGTAGAAgtaagtttaaagctacttgagtct-taatcttggttatacttctgcaaaatactttgcttatcgttattattttctagtaata-atcatccatatgat-atac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29655975|gb|CB652250.1|CB652250
EST:     TGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAA                         GCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTAT
genomic: TGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAAgtaagacaaa ... tccatttcagGCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTAT
EST: gi|29624991|gb|CB630002.1|CB630002
EST:     TGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAA                         GCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTAT
genomic: TGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAAgtaagacaaa ... tccatttcagGCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTAT
EST: gi|86904903|gb|CI310696.1|CI310696
EST:     TGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAA                         GCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTAT
genomic: TGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAAgtaagacaaa ... tccatttcagGCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTAT
EST: gi|44674448|gb|CR287882.1|CR287882
EST:     TGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAA                         GCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTAT
genomic: TGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAAgtaagacaaa ... tccatttcagGCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTAT
EST: gi|29630138|gb|CB635147.1|CB635147
EST:     TGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAA                         GCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTAT
genomic: TGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAAgtaagacaaa ... tccatttcagGCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTAT
EST: gi|58606676|gb|CK034709.1|CK034709
EST:     TGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAA                         GCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTAT
genomic: TGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAAgtaagacaaa ... tccatttcagGCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTAT
EST: gi|29662931|gb|CB659206.1|CB659206
EST:     TGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAA                         GCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTAT
genomic: TGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAAgtaagacaaa ... tccatttcagGCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTAT
EST: gi|29624993|gb|CB630004.1|CB630004
EST:     TGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAA                         GCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTAT
genomic: TGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAAgtaagacaaa ... tccatttcagGCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTAT