1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAAgtaagacaaatgtttgttaaatctctaggctctagccaactgataataatgtaaagtatgctgttagtttggcagtcctacagcccccgtttgctgacaa...
species | Oryza sativa |
transcript | LOC_Os07g22640.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAA GCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTATEST: gi|86904903|gb|CI310696.1|CI310696
genomic: TGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAAgtaagacaaa ... tccatttcagGCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTAT
EST: TGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAA GCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTATEST: gi|29665127|gb|CB661402.1|CB661402
genomic: TGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAAgtaagacaaa ... tccatttcagGCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTAT
EST: CAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAA GCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTATEST: gi|44674448|gb|CR287882.1|CR287882
genomic: CAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAAgtaagacaaa ... tccatttcagGCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTAT
EST: TGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAA GCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTATEST: gi|29630138|gb|CB635147.1|CB635147
genomic: TGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAAgtaagacaaa ... tccatttcagGCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTAT
EST: TGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAA GCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTATEST: gi|58606676|gb|CK034709.1|CK034709
genomic: TGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAAgtaagacaaa ... tccatttcagGCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTAT
EST: TGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAA GCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTATEST: gi|29662931|gb|CB659206.1|CB659206
genomic: TGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAAgtaagacaaa ... tccatttcagGCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTAT
EST: TGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAA GCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTATEST: gi|29624993|gb|CB630004.1|CB630004
genomic: TGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAAgtaagacaaa ... tccatttcagGCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTAT
EST: TGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAA GCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTATEST: gi|29624991|gb|CB630002.1|CB630002
genomic: TGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAAgtaagacaaa ... tccatttcagGCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTAT
EST: TGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAA GCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTAT
genomic: TGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAAgtaagacaaa ... tccatttcagGCTGCCACTGCAGTAGTCAAGGAATCTGTTGAGCCACTGCTAGATGATTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAAATGGCTGAACAAGCATCTCAGCAAACTCTGGCCTTTCGTTGATCAAgtaagacaaatgtttgttaaatctctaggctctagccaactgataataatgtaaagtatgctgttagtttggcagtcctacagcccccgtttgctgacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccccgt