1 5' 3' | 2 5' 3' | 3 5' 3' |
CAGAGCGCTATGACCGGAATGTCACTGAGCAAACACTTAAGGCTATCTCTCTTATTACAAAGATTAGACATGAACGGCAGAAGAAACATATTACAGAGAGgttggcatctgaatttttattcagtatctgtttattcacgaaattatctttgcctgatatgaactgaatttttaacag
species | Oryza sativa |
transcript | LOC_Os07g19190.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTTATTACAAAGATTAGACATGAACGGCAGAAGAAACATATTACAGAGAG GCAAAAACAGGGTAAGACAAAGCAACGGGAGAGGGATGCTAAGGAGTTGGAEST: gi|86260520|gb|CI066393.1|CI066393
genomic: CTTATTACAAAGATTAGACATGAACGGCAGAAGAAACATATTACAGAGAGgttggcatct ... tttttaacagGCAAAAACAGGGTAAGACAAAGCAACGGGAGAGGGATGCTAAGGAGTTGGA
EST: CTTATTACAAAGATTAGACATGAACGGCAGAAGAAACATATTACAGAGAG GCAAAAACAGGGTAAGACAAAGCAACGGGAGAGGGATGCTAAGGAGTTGGAEST: gi|14192515|gb|AU184726.1|AU184726
genomic: CTTATTACAAAGATTAGACATGAACGGCAGAAGAAACATATTACAGAGAGgttggcatct ... tttttaacagGCAAAAACAGGGTAAGACAAAGCAACGGGAGAGGGATGCTAAGGAGTTGGA
EST: ACAAAGATTAGACATGAACGGCAGAAGAAACATATTACAGAGAG GCAAAAACAGGGTAAGACAAAGCAACGGGAGAGGGATGCTAAGGAGTTGGAEST: gi|425829|gb|D22507.1|D22507
genomic: ACAAAGATTAGACATGAACGGCAGAAGAAACATATTACAGAGAGgttggcatct ... tttttaacagGCAAAAACAGGGTAAGACAAAGCAACGGGAGAGGGATGCTAAGGAGTTGGA
EST: CTTATTACAAAGATTAGACATGAACGGCAGAAGAAACATATTACAGAGAG GCAAAAACAGGGTAAGACAAAGCAACGGGAGAGGGATGCTAAGGAGTTGGAEST: gi|58688852|gb|CK077539.1|CK077539
genomic: CTTATTACAAAGATTAGACATGAACGGCAGAAGAAACATATTACAGAGAGgttggcatct ... tttttaacagGCAAAAACAGGGTAAGACAAAGCAACGGGAGAGGGATGCTAAGGAGTTGGA
EST: CTTATTACAAAGATTAGACATGAACGGCAGAAGAAACATATTACAGAGAG GCAAAAACAGGGTAAGACAAAGCAACGGGAGAGGGATGCTAAGGAGTTGGAEST: gi|88241618|gb|CI241467.1|CI241467
genomic: CTTATTACAAAGATTAGACATGAACGGCAGAAGAAACATATTACAGAGAGgttggcatct ... tttttaacagGCAAAAACAGGGTAAGACAAAGCAACGGGAGAGGGATGCTAAGGAGTTGGA
EST: CTTATTACAAAGATTAGACATGAACGGCAGAAGAAACATATTACAGAGAG GCAAAAACAGGGTAAGACAAAGCAACGGGAGAGGGATGCTAAGGAGTTGGAEST: gi|58675839|gb|CK064526.1|CK064526
genomic: CTTATTACAAAGATTAGACATGAACGGCAGAAGAAACATATTACAGAGAGgttggcatct ... tttttaacagGCAAAAACAGGGTAAGACAAAGCAACGGGAGAGGGATGCTAAGGAGTTGGA
EST: CTTATTACAAAGATTAGACATGAACGGCAGAAGAAACATATTACAGAGAG GCAAAAACAGGGTAAGACAAAGCAACGGGAGAGGGATGCTAAGGAGTTGGAEST: gi|3760617|gb|C97871.1|C97871
genomic: CTTATTACAAAGATTAGACATGAACGGCAGAAGAAACATATTACAGAGAGgttggcatct ... tttttaacagGCAAAAACAGGGTAAGACAAAGCAACGGGAGAGGGATGCTAAGGAGTTGGA
EST: ACATGAACGGC-GAAGAAACATATTACAGAGAG GCAAAAACAGGGTAAGACAAAGCAACGGGAGAGGGATGCTAAGGAGTTGGAEST: gi|88213747|gb|CI213596.1|CI213596
genomic: ACATGAACGGCAGAAGAAACATATTACAGAGAGgttggcatct ... tttttaacagGCAAAAACAGGGTAAGACAAAGCAACGGGAGAGGGATGCTAAGGAGTTGGA
EST: CTTATTACAAAGATTAGACATGAACGGCAGAAGAAACATATTACAGAGAG GCAAAAACAGGGTAAGACAAAGCAACGGGAGAGGGATGCTAAGGAGTTGGAEST: gi|88978643|gb|CI384984.1|CI384984
genomic: CTTATTACAAAGATTAGACATGAACGGCAGAAGAAACATATTACAGAGAGgttggcatct ... tttttaacagGCAAAAACAGGGTAAGACAAAGCAACGGGAGAGGGATGCTAAGGAGTTGGA
EST: CTTATTACAAAGATTAGACATGAACGGCAGAAGAAACATATTACAGAGAG GCAAAAACAGGGTAAGACAAAGCAACGGGAGAGGGATGCTAAGGAGTTGGAEST: gi|9865927|gb|AU101677.1|AU101677
genomic: CTTATTACAAAGATTAGACATGAACGGCAGAAGAAACATATTACAGAGAGgttggcatct ... tttttaacagGCAAAAACAGGGTAAGACAAAGCAACGGGAGAGGGATGCTAAGGAGTTGGA
EST: CTTATTACAAAGATTAGACATGAACGGCAGAAGAAACATATTACAGAGAG GCAAAAACAGGGTAAGACAAAGCAACGGGAGAGGGATGCTAAGGAGTTGGAEST: gi|88257346|gb|CI359734.1|CI359734
genomic: CTTATTACAAAGATTAGACATGAACGGCAGAAGAAACATATTACAGAGAGgttggcatct ... tttttaacagGCAAAAACAGGGTAAGACAAAGCAACGGGAGAGGGATGCTAAGGAGTTGGA
EST: CAAAGATTAGACATGAACGGCAGAAGAAACATATTACAGAGAG GCAAAAACAGGGTAAGACAAAGCAACGGGAGAGGGATGCTAAGGAGTTGGAEST: gi|58030381|gb|CX727924.1|CX727924
genomic: CAAAGATTAGACATGAACGGCAGAAGAAACATATTACAGAGAGgttggcatct ... tttttaacagGCAAAAACAGGGTAAGACAAAGCAACGGGAGAGGGATGCTAAGGAGTTGGA
EST: CTTATTACAAAGATTAGACATGAACGGCAGAAGAAACATATTACAGAGAG GCAAAAACAGGGTAAGACAAAGCAACGGGAGAGGGATGCTAAGGAGTTGGAEST: gi|58591169|gb|CF989477.1|CF989477
genomic: CTTATTACAAAGATTAGACATGAACGGCAGAAGAAACATATTACAGAGAGgttggcatct ... tttttaacagGCAAAAACAGGGTAAGACAAAGCAACGGGAGAGGGATGCTAAGGAGTTGGA
EST: CTTATTACAAAGATTAGACATGAACGGCAGAAGAAACATATTACAGAGAG GCAAAAACAGGGTAAGACAAAGCAACGGGAGAGGGATGCEST: gi|58589775|gb|CF988083.1|CF988083
genomic: CTTATTACAAAGATTAGACATGAACGGCAGAAGAAACATATTACAGAGAGgttggcatct ... tttttaacagGCAAAAACAGGGTAAGACAAAGCAACGGGAGAGGGATGC
EST: CTTATTACAAAGATTAGACATGAACGGCAGAAGAAACATATTACAGAGAG GCAAAAACAGGGTAAGACAAAGCAACGGGAGAGGGATGCTAAGGAGTTGGAEST: gi|86531386|gb|CI171592.1|CI171592
genomic: CTTATTACAAAGATTAGACATGAACGGCAGAAGAAACATATTACAGAGAGgttggcatct ... tttttaacagGCAAAAACAGGGTAAGACAAAGCAACGGGAGAGGGATGCTAAGGAGTTGGA
EST: CTTATTACAAAGATTAGACATGAACGGCAGAAGAAACATATTACAGAGAG GCAAAAACAGGGTAAGACAAAGCAACGGGAGAGGGATGCTAAGGAGTTGGA
genomic: CTTATTACAAAGATTAGACATGAACGGCAGAAGAAACATATTACAGAGAGgttggcatct ... tttttaacagGCAAAAACAGGGTAAGACAAAGCAACGGGAGAGGGATGCTAAGGAGTTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGAGCGCTATGACCGGAATGTCACTGAGCAAACACTTAAGGCTATCTCTCTTATTACAAAGATTAGACATGAACGGCAGAAGAAACATATTACAGAGAGgttggcatctgaatttttattcagtatctgtttattcacgaaattatctttgcctgatatgaactgaatttttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA