1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTTTATGCAGATGGAGATAGCTCAGTATCAACGTATGAAAGGCGTGCAAGCCTTAGAGAATTCTATGgtaatctgtaacattcatgtaatatgtaattcgtaaaagtctaatttggaatcatagccttaaacaatctctgccttccag
species | Oryza sativa |
transcript | LOC_Os07g17400.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TAGCTCAGTATCAACGTATGAAAGGCGTGCAAGCCTTAGAGAATTCTATG CGATCATCTACCCTATCCTTCAACAGCTTGAGGGTAGTTTGATTGAGAGGGEST: gi|33685850|gb|CF314089.1|CF314089
genomic: TAGCTCAGTATCAACGTATGAAAGGCGTGCAAGCCTTAGAGAATTCTATGgtaatctgta ... tgccttccagCGATCATCTACCCTATCCTTCAACAGCTTGAGGGTAGTTTGATTGAGAGGG
EST: TAGCTCAGTATCAACGTATGAAAGGCGTGCAGGCCTTAGAGAATTCTATG CGATCATCTACCCTATCCTTCAACAGCTTGAGGGTAGTTTGATTGAGAGGGEST: gi|58692534|gb|CK081221.1|CK081221
genomic: TAGCTCAGTATCAACGTATGAAAGGCGTGCAAGCCTTAGAGAATTCTATGgtaatctgta ... tgccttccagCGATCATCTACCCTATCCTTCAACAGCTTGAGGGTAGTTTGATTGAGAGGG
EST: TAGCTCAGTATCAACGTATGAAAGGCGTGCAAGCCTTAGAGAATTCTATG CGATCATCTACCCTATCCTTCAACAGCTTGAGGGTAGTTTGATTGAGAGGGEST: gi|33684777|gb|CF313016.1|CF313016
genomic: TAGCTCAGTATCAACGTATGAAAGGCGTGCAAGCCTTAGAGAATTCTATGgtaatctgta ... tgccttccagCGATCATCTACCCTATCCTTCAACAGCTTGAGGGTAGTTTGATTGAGAGGG
EST: TAGCTCAGTATCAACGTATGAAAGGCGTGCAAGCCTTAGAGAATTCTATG CGATCATCTACCCTATCCTTCAACAGCTTGAGGGTAGTTTGATTGAGAGGG
genomic: TAGCTCAGTATCAACGTATGAAAGGCGTGCAAGCCTTAGAGAATTCTATGgtaatctgta ... tgccttccagCGATCATCTACCCTATCCTTCAACAGCTTGAGGGTAGTTTGATTGAGAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTATGCAGATGGAGATAGCTCAGTATCAACGTATGAAAGGCGTGCAAGCCTTAGAGAATTCTATGgtaatctgtaacattcatgtaatatgtaattcgtaaaagtctaatttggaatcatagccttaaacaatctctgccttccag
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