1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGAGAACTTCAATGAGAGAGTTTTGCCTTCAATTATCCATGAAACACTTAAAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAGgttaagacctgaacatatgctttttatagtctttttttcttatatttgatgggggtcaacattacttgggggcgctaactgtttgtttcactctccaaatccag
species | Oryza sativa |
transcript | LOC_Os07g15880.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACAATGCGAGTCAGCTAATCACACAGAGAGAG ACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTTEST: gi|86498079|gb|CI140712.1|CI140712
genomic: ACAATGCGAGTCAGCTAATCACACAGAGAGAGgttaagacct ... ccaaatccagACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTT
EST: AAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAG ACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTTEST: gi|32948492|gb|BP185064.1|BP185064
genomic: AAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAGgttaagacct ... ccaaatccagACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTT
EST: AAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAG ACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTTEST: gi|218492050|gb|FG952147.1|FG952147
genomic: AAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAGgttaagacct ... ccaaatccagACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTT
EST: CTAATCACACAGAGAGAG ACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTTEST: gi|58693615|gb|CK082302.1|CK082302
genomic: CTAATCACACAGAGAGAGgttaagacct ... ccaaatccagACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTT
EST: AAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAG ACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTTEST: gi|218496989|gb|FG950832.1|FG950832
genomic: AAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAGgttaagacct ... ccaaatccagACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTT
EST: AAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAG ACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTTEST: gi|86594738|gb|CI255814.1|CI255814
genomic: AAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAGgttaagacct ... ccaaatccagACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTT
EST: AAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAG ACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTTEST: gi|33803697|gb|CF327723.1|CF327723
genomic: AAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAGgttaagacct ... ccaaatccagACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTT
EST: AAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAG ACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTTEST: gi|86594799|gb|CI255875.1|CI255875
genomic: AAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAGgttaagacct ... ccaaatccagACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTT
EST: AAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAG ACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTTEST: gi|218494609|gb|FG957575.1|FG957575
genomic: AAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAGgttaagacct ... ccaaatccagACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTT
EST: CACACAGAGAGAG A-CGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTTEST: gi|89180747|gb|CI009655.1|CI009655
genomic: CACACAGAGAGAGgttaagacct ... ccaaatccagACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTT
EST: CACACAGAGAGAG ACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTTEST: gi|8335502|gb|BE040419.1|BE040419
genomic: CACACAGAGAGAGgttaagacct ... ccaaatccagACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTT
EST: AAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAG ACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTTEST: gi|117233393|gb|CT848123.1|CT848123
genomic: AAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAGgttaagacct ... ccaaatccagACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTT
EST: AAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAG ACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTTEST: gi|218488311|gb|FG953544.1|FG953544
genomic: AAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAGgttaagacct ... ccaaatccagACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTT
EST: AAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAG ACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTTEST: gi|11118161|gb|AU163349.1|AU163349
genomic: AAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAGgttaagacct ... ccaaatccagACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTT
EST: AGCTAATCACCNCAGAGAGAAG NCCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTEST: gi|8335500|gb|BE040418.1|BE040418
genomic: AGCTAATCA-CACAGAGAG-AGgttaagacct ... ccaaatccagACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTT
EST: AAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAG ACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTTEST: gi|58694784|gb|CK083471.1|CK083471
genomic: AAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAGgttaagacct ... ccaaatccagACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTT
EST: AAGCTG-TGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAG ACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTTEST: gi|218489869|gb|FG943959.1|FG943959
genomic: AAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAGgttaagacct ... ccaaatccagACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTT
EST: CAGCTAATCACACAGAGAGAG ACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTTEST: gi|27576598|gb|CA999292.1|CA999292
genomic: CAGCTAATCACACAGAGAGAGgttaagacct ... ccaaatccagACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTT
EST: AAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAG ACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTTEST: gi|218492453|gb|FG950899.1|FG950899
genomic: AAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAGgttaagacct ... ccaaatccagACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTT
EST: AAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAG ACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTTEST: gi|58686687|gb|CK075374.1|CK075374
genomic: AAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAGgttaagacct ... ccaaatccagACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTT
EST: AAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAG ACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTTEST: gi|11118160|gb|AU163348.1|AU163348
genomic: AAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAGgttaagacct ... ccaaatccagACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTT
EST: AAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAG ACCGTGAGTAGGGAAGATAAGAAAGEST: gi|218497361|gb|FG953033.1|FG953033
genomic: AAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAGgttaagacct ... ccaaatccagACCGTGAGTAGGGA-GATAAGAAAG
EST: AGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAG ACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTTEST: gi|218481986|gb|FG957221.1|FG957221
genomic: AGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAGgttaagacct ... ccaaatccagACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTT
EST: AAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAG ACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTT
genomic: AAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAGgttaagacct ... ccaaatccagACCGTGAGTAGGGAGATAAGAAAGATACTGACTGAGAGGGCCAGGAATTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGAACTTCAATGAGAGAGTTTTGCCTTCAATTATCCATGAAACACTTAAAGCTGTTGTCGCACAATACAATGCGAGTCAGCTAATCACACAGAGAGAGgttaagacctgaacatatgctttttatagtctttttttcttatatttgatgggggtcaacattacttgggggcgctaactgtttgtttcactctccaaatccag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT