1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCTTCAAAGAAACCTGCAGCGCGTGCAAAAGTTCCTTTCGAGAAGGGCTATAGCCAAATGGATTGGCTTAAGCTGACCCGTACACATCCTGATCTTGCAGgtaaattgtagctgctactgtttcttcatctctgtatgtatgattattactggatggctagtgtacatttgaaaactttcttagttaatgtattgttact...
species | Oryza sativa |
transcript | LOC_Os07g12830.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TAGCCAAATGGATTGGCTTAAGCTGACCCGTACACATCCTGATCTTGCAG GGCTCAAGGGGCAGTTAAACCGAAGGTTGATTTCTCTAGAAGAAGTTAAACEST: gi|33680256|gb|CF308495.1|CF308495
genomic: TAGCCAAATGGATTGGCTTAAGCTGACCCGTACACATCCTGATCTTGCAGgtaaattgta ... atttttatagGGCTCAAGGGGCAGTTAAACCGAAGGTTGATTTCTCTAGAAGAAGTTAAAC
EST: TAGCCAAATGGATTGGCTTAAGCTGACCCGTACACATCCTGATCTTGCAG GGCTCAAGGGGCAGTTAAACCGAAGGTTGATTTCTCTAGAAGAAGTTAAACEST: gi|58693203|gb|CK081890.1|CK081890
genomic: TAGCCAAATGGATTGGCTTAAGCTGACCCGTACACATCCTGATCTTGCAGgtaaattgta ... atttttatagGGCTCAAGGGGCAGTTAAACCGAAGGTTGATTTCTCTAGAAGAAGTTAAAC
EST: TAGCCAAATGGATTGGCTTAAGCTGACCCGTACACATCCTGATCTTGCAG GGCTAAAGGGGCAGTCAAACCGAAGGTTGATTTCTCTAGAAGAAGTTAA-CEST: gi|86420762|gb|CI056751.1|CI056751
genomic: TAGCCAAATGGATTGGCTTAAGCTGACCCGTACACATCCTGATCTTGCAGgtaaattgta ... atttttatagGGCTCAAGGGGCAGTTAAACCGAAGGTTGATTTCTCTAGAAGAAGTTAAAC
EST: TAGCCAAATGGATTGGCTTAAGCTGACCCGTACACATCCTGATCTTGCAG GGCTCAAGGGGCAGTTAAACCGAAGGTTGATTTCTCTAGAAGAAGTTAAACEST: gi|58602896|gb|CK013424.1|CK013424
genomic: TAGCCAAATGGATTGGCTTAAGCTGACCCGTACACATCCTGATCTTGCAGgtaaattgta ... atttttatagGGCTCAAGGGGCAGTTAAACCGAAGGTTGATTTCTCTAGAAGAAGTTAAAC
EST: TAGCCAAATGGATTGGCTTAAGCTGACCCGTACACATCCTGATCTTGCAG GGCTCAAGGGGCAGTTAAACCGAAGGTTGATTTCTCTAGAAGAAGTTAAAC
genomic: TAGCCAAATGGATTGGCTTAAGCTGACCCGTACACATCCTGATCTTGCAGgtaaattgta ... atttttatagGGCTCAAGGGGCAGTTAAACCGAAGGTTGATTTCTCTAGAAGAAGTTAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTCAAAGAAACCTGCAGCGCGTGCAAAAGTTCCTTTCGAGAAGGGCTATAGCCAAATGGATTGGCTTAAGCTGACCCGTACACATCCTGATCTTGCAGgtaaattgtagctgctactgtttcttcatctctgtatgtatgattattactggatggctagtgtacatttgaaaactttcttagttaatgtattgttact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA