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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataattgattacccaccatactacttcaaatatctttttgccatcttcggcatttggtaatgttggcttgttctttctcatttaccag

Basic information

species Oryza sativa
transcript LOC_Os07g12650.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g12650.3 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G132929_T03 (Zea mays), 5'ss of exon 3
CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataattgattacccaccatactacttcaaatatctttttgccatctt--cggcatttggtaatgttggcttgttctttctcatttaccag
||||||||||| || ||||||||||||||||||||||| |||||||||||||| || |||||||||||   ||  | ||| || ||  ||||||| |||    |   || | ||  |    || |  | |  | || |  || |   | |   | |||||
CTTTGCAAGATCGACTCTGAGGGCAAGGCGAGGAAGGTTGTAGGCTGCTCCTGTGTTGTTGTCAAGgtgagtatatcatttcctacggtactactacaagcgaccactttcaattatatttgcgtaagctgttttttgtctgctacatttggatcaccag

upper sequence: LOC_Os07g12650.3 (Oryza sativa), 5'ss of exon 3
lower sequence: AT1G15930.2 (Arabidopsis thaliana), 5'ss of exon 4
CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataa--ttgattacccaccatactacttcaaatatctttttgccatcttcggcatttggtaatgttggcttgttctttc--tcatttaccag
|| |||||||||||||||||||| || || |||||||| || || ||||| ||  | |||||||||||| ||||  |     |   | |||   | ||  |  ||   ||    ||  ||   | ||  |    ||  |  |||  |    |   ||  |||
CTCTGCAAGATTGATTCTGAGGGTAATGCCAGGAAGGTTGTTGGATGCTCATGTCTTGTTGTCAAGgtatataaagtcatggatgaatcatctaatttttaggattcattgatgatggtccatagttcttttacttaacacgtttctgtgatttcttgtcag

upper sequence: LOC_Os07g12650.3 (Oryza sativa), 5'ss of exon 3
lower sequence: AT2G32060.1 (Arabidopsis thaliana), 5'ss of exon 4
CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataattgattacccaccatactacttcaaatatctttttgccatcttcggcatttg----gtaatgttggcttgttctttctcatttaccag-------------------------
|||||||||||||||||||||||||| || |||||||| || || ||||| ||  ||||  ||||||||   |||   ||   ||   |  || | ||   ||| |     | |||  |  | |||    || ||   |   ||| | |  |  ||||   |                         
CTTTGCAAGATTGATTCTGAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGATCAAGgtaacaaatcctttttacattctcttaatccatgaatcataggaacctcta-gatacttgcaaagtcattgagaaatgtgcctggtggtttatttgtgtggttctgtgttgattgttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88484952|gb|CI422223.1|CI422223
EST:     CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG                         GACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
EST: gi|6431598|gb|AU081250.1|AU081250
EST:     CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG                         GACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
EST: gi|88462824|gb|CI519736.1|CI519736
EST:     CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG                         GACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
EST: gi|88206820|gb|CI205136.1|CI205136
EST:     CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG                         GACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
EST: gi|55439432|gb|CV733024.1|CV733024
EST:     TTGAGGGCAAGGCGAGAAAGGTCGTAGGCTGCTCTTGGGTCGTTGTCAAG                         GACTTCGGTGAAGAGTCAAAGGGCCTCAACATAGTCCAGGACTATGTCAAG
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
EST: gi|286843|gb|D15650.1|D15650
EST:     CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG                         GACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
EST: gi|88239555|gb|CI240032.1|CI240032
EST:     CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG                         GACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
EST: gi|88268251|gb|CI378186.1|CI378186
EST:     CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG                         GACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
EST: gi|33805256|gb|CF328505.1|CF328505
EST:     CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG                         GACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
EST: gi|4716547|gb|AU057663.1|AU057663
EST:     CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG                         GACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
EST: gi|88526727|gb|CI454809.1|CI454809
EST:     CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG                         GACTTCGG-GAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
EST: gi|88244300|gb|CI243422.1|CI243422
EST:     CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG                         GACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
EST: gi|10423675|gb|AU108196.1|AU108196
EST:     CTGAGGGCAAGGCGAGGAAGGTCGTAG-CTGCTCCTGCGTCGTTGTCAAG                         GACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
EST: gi|88541748|gb|CI471036.1|CI471036
EST:     CTGAGGGCAAGNCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG                         GACTTCGGTGAAGATTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
EST: gi|218504870|gb|FG955942.1|FG955942
EST:     CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG                         GACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
EST: gi|88375932|gb|CI528236.1|CI528236
EST:     CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG                         GACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
EST: gi|88991679|gb|CI019857.1|CI019857
EST:     CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG                         GACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
EST: gi|6934807|gb|AU082344.1|AU082344
EST:     CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG                         GACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
EST: gi|86531994|gb|CI172200.1|CI172200
EST:     CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG                         GACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
EST: gi|55435531|gb|CV730896.1|CV730896
EST:     TTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG                         GACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
EST: gi|88487953|gb|CI425224.1|CI425224
EST:     CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG                         GACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
EST: gi|88438833|gb|CI546315.1|CI546315
EST:     CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG                         GACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
EST: gi|396941191|gb|HO188400.1|HO188400
EST:     CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG                         GACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
EST: gi|88490307|gb|CI427579.1|CI427579
EST:     CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG                         GACTTCGGTGAAGAGTCAGAGGGGCCTCAACATAGTCCAGGACTATGTCAA
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGG-CCTCAACATAGTCCAGGACTATGTCAA
EST: gi|55432689|gb|CV729365.1|CV729365
EST:     TTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG                         GACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACAATGTCAAG
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
EST: gi|86510844|gb|CI153477.1|CI153477
EST:     CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG                         GACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
EST: gi|58597839|gb|CK008367.1|CK008367
EST:     CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG                         GACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
EST: gi|88479731|gb|CI417002.1|CI417002
EST:     CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG                         GACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
EST: gi|4715040|gb|AU056157.1|AU056157
EST:     CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG                         GACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
EST: gi|6727454|gb|AU082119.1|AU082119
EST:     CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG                         GACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
EST: gi|58586800|gb|CF985108.1|CF985108
EST:     CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCCAG                         GACTTCGGTGAA
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAA
EST: gi|33689961|gb|CF318200.1|CF318200
EST:     CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG                         GACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
EST: gi|86426700|gb|CI071797.1|CI071797
EST:     CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG                         GACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
EST: gi|87022556|gb|CI267693.1|CI267693
EST:     CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG                         GACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
EST: gi|163925955|gb|EG714983.1|EG714983
EST:     CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG                         GACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG
genomic: CTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 59 (downstream exon)
Score: 77

CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataatt ... catttaccagGACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAGTCCCACTAGATATAGCGTTCCCGATATCCAGAACTTGTGCTTGACATTG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAGgtagataattgattacccaccatactacttcaaatatctttttgccatcttcggcatttggtaatgttggcttgttctttctcatttaccag

- - - - - - - - - - - - - - - - - - - - -  GCTGCT