1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCAGCCTGATTATGTCAAGTTGGTCAAGGCACTCTGCGCTGAGCACAATGTTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagatacattactcttctattagctataccttgtcaattgttatactgtgttaatctgatgtctaggctgccggataagattttttgatttagccttc...
species | Oryza sativa |
transcript | LOC_Os07g12650.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCEST: gi|6431598|gb|AU081250.1|AU081250
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGANTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCEST: gi|88462824|gb|CI519736.1|CI519736
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCEST: gi|88206820|gb|CI205136.1|CI205136
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCEST: gi|66914528|gb|CX101376.1|CX101376
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCEST: gi|286843|gb|D15650.1|D15650
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCEST: gi|88239555|gb|CI240032.1|CI240032
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCEST: gi|6727454|gb|AU082119.1|AU082119
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCEST: gi|88268251|gb|CI378186.1|CI378186
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCEST: gi|33805256|gb|CF328505.1|CF328505
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCEST: gi|4716547|gb|AU057663.1|AU057663
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCEST: gi|88526727|gb|CI454809.1|CI454809
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCEST: gi|88244300|gb|CI243422.1|CI243422
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCEST: gi|88358899|gb|CI619403.1|CI619403
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTAC-GTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CCTTTGCAAGATTGATTCTGAGGGCAAGGCEST: gi|396941191|gb|HO188400.1|HO188400
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagC-TTTGCAAGATTGATTCTGAGGGCAAGGC
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCEST: gi|55432687|gb|CV729364.1|CV729364
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCEST: gi|88541748|gb|CI471036.1|CI471036
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTCTGAGGGCAAGNCGAGGAAGGTCGTAGGCTGCTCCEST: gi|218504870|gb|FG955942.1|FG955942
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCEST: gi|88375932|gb|CI528236.1|CI528236
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCEST: gi|88991679|gb|CI019857.1|CI019857
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTACCGTGCCTAGTGCTATAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCEST: gi|86531994|gb|CI172200.1|CI172200
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCEST: gi|55435531|gb|CV730896.1|CV730896
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTTTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCEST: gi|88487953|gb|CI425224.1|CI425224
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCEST: gi|10423675|gb|AU108196.1|AU108196
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAG-CTGCTCCEST: gi|88438833|gb|CI546315.1|CI546315
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCEST: gi|6934807|gb|AU082344.1|AU082344
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCEST: gi|88490307|gb|CI427579.1|CI427579
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCEST: gi|218485304|gb|FG956287.1|FG956287
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTEST: gi|55432689|gb|CV729365.1|CV729365
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATT
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTTTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCEST: gi|86510844|gb|CI153477.1|CI153477
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCEST: gi|58597839|gb|CK008367.1|CK008367
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCEST: gi|88479731|gb|CI417002.1|CI417002
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCEST: gi|4715040|gb|AU056157.1|AU056157
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TCACCTCCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCEST: gi|58586800|gb|CF985108.1|CF985108
genomic: TCACCT-CGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCEST: gi|33689961|gb|CF318200.1|CF318200
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCEST: gi|86426700|gb|CI071797.1|CI071797
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCEST: gi|427734|gb|D23869.1|D23869
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTNGGCAGGG CTTTGCAAGATTGATTCTGAGGGEST: gi|87022556|gb|CI267693.1|CI267693
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGG
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCEST: gi|163925955|gb|EG714983.1|EG714983
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
EST: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGG CTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
genomic: TTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagataca ... ttgtttgcagCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAGCCTGATTATGTCAAGTTGGTCAAGGCACTCTGCGCTGAGCACAATGTTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTGGCGAGTGGGCAGGGgtgagatacattactcttctattagctataccttgtcaattgttatactgtgttaatctgatgtctaggctgccggataagattttttgatttagccttc
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