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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCCTTTCTTTTGCAGTGACCGTGAATACATTTTTGGGCGGCGGATATGGGAATCTGGGAAAACTTACTATTGTGTTACAAAGgtatttctaccacaaggttccagtattactattttcacaagacatttttatgatatgctaacctggctttggctgatgttctcatatggatatctaactt...

Basic information

species Oryza sativa
transcript LOC_Os07g08760.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g08760.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G124965_T01 (Zea mays), 5'ss of exon 4
TTCCCTTTCTTTTGCAGTGACCGTGAATACATTTTTGGGCGGCGGATATGGGAATCTGGGAAAACTTACTATTGTGTTACAAAGgtatttctaccacaaggttccagtattactattttcacaagac---atttttatgatatgctaacctggctttggctgatgttctcatatggatatctaactt-
||||| |||||||||||||||||||||||||| |||||  | || ||||||||||||||||| ||||||||||||||||||||||||| | ||  |||  |||  | |   |  |     |   |       | || |  |     || |||   |  ||| |||  | |||| | | |  | |  | 
TTCCCATTCTTTTGCAGTGACCGTGAATACATCTTTGGAGGACGCATATGGGAATCTGGGAAGACTTACTATTGTGTTACAAAGgtatgtttat-acagtgttttattcagataagccctatttggttgagctgttgtatttgaaaaagctgatgtgagct-atgagc-cata-gaaaagttgatgtg

upper sequence: LOC_Os07g08760.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G121223_T02 (Zea mays), 5'ss of exon 5
TTCCCTTTCTTTTGCAGTGACCGTGAATACATTTTTGGGCGGCGGATATGGGAATCTGGGAAAACTTACTATTGTGTTACAAAGgtatttctaccacaaggttccagta-ttactattttcacaagacatttttatgatatgctaacctggctttggctgatgttctcatatggatatctaactt--
||||| |||||||||||||||||||||||||| |||||  | || ||||||||||||||||| ||||||||||||||||| ||||||  | ||| | |  |||  | ||     || ||  ||   |  |  |  | ||   |   ||    | ||    | |   ||||||   | | |||||   
TTCCCGTTCTTTTGCAGTGACCGTGAATACATCTTTGGAGGACGCATATGGGAATCTGGGAAGACTTACTATTGTGTTACTAAGgtacatgtac-atagtgttttattaaccgatacttctactc-atgtaatgttaatgctccctccattatctgaa-aaagaattcatataattttataactgac