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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGGAAGAAGGACTACAAGGATGGGAGGTTCTCCCAGGTTGTTTCTAACGCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttctgcttaatttgtgctcgcttaccacattttttaggcttgttgtaacttgcatctgtaaggtgctgtacatatactccctccgtccaaaaaa...

Basic information

species Oryza sativa
transcript LOC_Os07g07709.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g07709.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA10G36880.2 (Glycine max), 5'ss of exon 3
ACAGGAAGAAGGACTACAAGGATGGGAGGTTCTCCCAGGTTGTTTCTAACGCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgttt---ggttctgcttaatttgtgctcgcttaccacattttttaggcttg-ttgtaacttgcatctgtaaggtgctgtacatatactccctccgtccaaaaaa
|||| |||||||| ||||||||||| |  | ||| || ||||| ||||| || || || ||||||||||||||||| || ||||| || ||||| |||||||      | |   | |  | ||   |    |   | | | |||||   |   ||  ||     | ||| |    |      | || ||   | ||        
ACAGAAAGAAGGATTACAAGGATGGCAAATACTCTCAAGTTGTGTCTAATGCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGgtaatgaagattgacgttttctggattaatatggaaaaatgtttagatataactgatacactgttttgtgaaaatcaacctgtttaatcttgctgtgttt----

upper sequence: LOC_Os07g07709.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA20G30730.1 (Glycine max), 5'ss of exon 3
ACAGGAAGAAGGACTACAAGGATGGGAGGTTCTCCCAGGTTGTTTCTAACGCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttctgcttaatt-tgtgctcgcttaccacattttttaggcttgttgtaacttgcatctgtaaggtgctgtacatatactccctccgtccaaaaaa-
|||| |||||||||||||||||||| | ||  || ||||| || || || || ||||| |||||| | ||||||||| | ||||| || ||||| |||||||          || ||| ||   |        | | | |||||   |    | |    || ||||   ||||    ||     |   | | | |||     
ACAGAAAGAAGGACTACAAGGATGGCAAGTATTCTCAGGTGGTGTCAAATGCACTGGATATGAAGTTGAGGGATGACTTGGAGAGACTTAAGAAAATCAGgtaattaagattttgattgtggatttatacgggaaaatgtttagatataac-tgatcctca-ctgttttgtgcaaatcaacctgtttattcttgcaatggtt

upper sequence: LOC_Os07g07709.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA20G30970.1 (Glycine max), 5'ss of exon 3
ACAGGAAGAAGGACTACAAGGATGGGAGGTTCTCCCAGGTTGTTTCTAACGCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttctgcttaatttgtgctcgcttacca-cattttttaggcttgttgt--aacttgcatctgtaaggtgctgtacatatactccctccgtccaaaaaa-
||||||||||||| ||||||||||| | || ||| |||||||| ||||| || || || |||||||||||||||||| | ||||| || |||||||||||||      ||  ||||  | || |  ||  | | |||||  |||    |||||  || ||   | |  |   |  |||     |  ||     |   | ||   
ACAGGAAGAAGGATTACAAGGATGGAAAGTACTCTCAGGTTGTGTCTAATGCTCTTGATATGAAGCTCAGGGATGACTTAGAGAGACTAAAGAAGATCAGgt----cactcattaacctttgttaactgtctatcatttcatagttgagttgttcaattttgttatcaagtataatgtttggttgttcgaattgagaataagtt

upper sequence: LOC_Os07g07709.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA10G36610.2 (Glycine max), 5'ss of exon 3
ACAGGAAGAAGGACTACAAGGATGGGAGGTTCTCCCAGGTTGTTTCTAACGCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttg--gttctgcttaatttgtgctcgcttaccacattttttaggcttgttgtaacttgcatctgtaaggtgctgtacatatactccctccgtccaaaaaa
|||| |||||||| ||||||||||| |  | ||| || ||||| ||||| || || || ||||||||||||||||| |||||||| || ||||| ||||||| |    |||  |||  ||     ||  |     |||| ||| |  || || | | |  ||  |   |  |  |||    ||  | |   |  | |||   
ACAGAAAGAAGGATTACAAGGATGGCAAATACTCTCAAGTTGTGTCTAATGCTCTTGATATGAAGCTCAGGGATGATCTTGAGAGACTCAAGAAAATCAGgtctatcattcaccttttttaactgtctatctattcattgttttgagttttttttattatcaagtccgat-ttttgtttgaatcatgctgactgctaaatc-

upper sequence: LOC_Os07g07709.1 (Oryza sativa), 5'ss of exon 3
lower sequence: AT1G34030.1 (Arabidopsis thaliana), 5'ss of exon 3
ACAGGAAGAAGGACTACAAGGATGGGAGGTTCTCCCAGGTTGTTTCTAACGCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttctgcttaatttgtgctcgcttaccacatt---ttttaggcttgttgtaacttgcatctgtaa-ggtgctgtacatatactccctccgtccaaaaaa
||||  |||| || ||||||||||||| || ||| || ||||| || || ||||| |||||||||||||||||||| |||||| | || ||||| |||||||       |   | |||| || || || | || ||    |  ||    |||  |  || |   || |||   || ||    |  | |  ||       || | 
ACAGACAGAAAGATTACAAGGATGGGAAGTACTCTCAAGTTGTCTCCAATGCCCTTGACATGAAGCTCAGGGATGATCTTGAGCGTCTCAAGAAAATCAGgtaaacccattagtcatttctgatc-ctaatcatataacatgataaatatgtcct--ctaggggctttaataatggtggttttgcattttcttacaatgaacag

upper sequence: LOC_Os07g07709.1 (Oryza sativa), 5'ss of exon 3
lower sequence: AT1G22780.1 (Arabidopsis thaliana), 5'ss of exon 3
ACAGGAAGAAGGACTACAAGGATGGGAGGTTCTCCCAGGTTGTTTCTAACGCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttctgctta-atttgtgctcgcttaccacattttttaggcttgttgtaacttgcatctgtaaggtgctgtacatatactccctccgtccaaaaaa----
||||  | ||||| |||||||||||||  | |||||| |||||||| || || || ||||||||| | || ||||| |||||| | || |||||||||||||      |  |  | |      ||| | | |   | |||||||      ||| | | | ||    | | |||    |||| |||  ||   |  || ||     
ACAGACAAAAGGATTACAAGGATGGGAAATACTCCCAAGTTGTTTCCAATGCTCTTGACATGAAGTTGAGAGATGATCTTGAGCGTCTCAAGAAGATCAGgtaacaaacaacacatacagacactctcct-ctgtagtttttagataccatgttaatagtata---atgatgcccatcata-actttctatatggaagaagctaa

upper sequence: LOC_Os07g07709.1 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv05s0020g03450.t01 (Vitis vinifera), 5'ss of exon 3
ACAGGAAGAAGGACTACAAGGATGGGAGGTTCTCCCAGGTTGTTTCTAACGCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgt--ttggttctgcttaatttgtgctcgcttaccacattttttagg-cttgttgtaacttgcatct-gtaaggtgctgtacatatactccctccgtccaaaaaa
|||||||||| || ||||| ||||| || |  || |||||||||||||| ||  |||||||||||||||||||||| |||||| |  |||||||||||||||  |   | ||  ||   |      |  ||| |||  |||  ||  | || || || ||   | |  |||  | ||  |   ||      | | |        
ACAGGAAGAAAGATTACAAAGATGGTAGATATTCTCAGGTTGTTTCTAATGCATTGGACATGAAGCTCAGGGATGATCTTGAGCGTTTGAAGAAGATCAGgtaatccatccttttttcatctattacttttatcactctttgaagaacatggtgcaatttttttttcataaattcctaaagtcatcaaatttgcattttg----

upper sequence: LOC_Os07g07709.1 (Oryza sativa), 5'ss of exon 3
lower sequence: PP1S215_71V6.1 (Physcomitrella patens), 5'ss of exon 3
ACAGGAAGAAGGACTACAAGGATGGGAGGTTCTCCCAGGTTGTTTCTAACGCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttgg------ttctgctt--aatttgtgctc---gcttac-cacattt---tttaggcttgttg-taacttgc-atctgtaaggtgctgtaca----tatactccctccgtccaaaaaa----------------------------------------------
||||||| || ||| |||| || ||  | | |||||||||||| ||||| ||| ||||||||||||||||||||||||||||| | ||||||||||||||||| |       |||| |||  | ||| || |    |||||  || ||||   ||||    | | | | |||||  || || |   ||| | ||     |  | | |  | | |   |                                                 
ACAGGAAAAAAGACCACAAAGACGGTCGCTACTCCCAGGTTGTATCTAATGCCTTGGACATGAAGCTCAGGGATGACCTTGAGCGTCTGAAGAAGATCAGgttagtgaaattttcttcttccagtttatgattaatgcttattcaaatttatatttacaaatatagatcacttgtgatttgaactatgcagcactctattgcattgcgcctggctttaggcagtgctgattgccttgtgtcatgacggcttggtttgggggatgcag

upper sequence: LOC_Os07g07709.1 (Oryza sativa), 5'ss of exon 3
lower sequence: PP1S14_438V6.1 (Physcomitrella patens), 5'ss of exon 3
ACAGGAAGAAGGACTACAAGGATGGGAGGTTCTCCCAGGTTGTTTCTAACGCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttctgcttaatttgtgctcgcttaccacattttttaggcttgttgtaacttgcatctgtaaggtgc-tgtacatatactccctccgtccaaaaaa-
| |||||||| ||  ||||||||||  | | ||||||||||||||| |||||| ||||||||||||| ||||||||||| ||| | || |||||||||||||| |  | | |||   |  |      | |  |   |  | |  |    |  |   |   | |  ||  ||| |||     |      || |     ||   
ATAGGAAGAAAGATCACAAGGATGGTCGCTACTCCCAGGTTGTTTCGAACGCCTTGGACATGAAGCTGAGGGATGACCTCGAGCGCCTAAAGAAGATCAGgttcgcatattcttgtctcctagcatttcattatgatgctcaaac--actagactctcattttccaaaatgcatgtcagcctttcaattctgaattcaattt

upper sequence: LOC_Os07g07709.1 (Oryza sativa), 5'ss of exon 3
lower sequence: PP1S215_81V6.1 (Physcomitrella patens), 5'ss of exon 3
ACAGGAAGAAGGACTACAAGGATGGGAGGTTCTCCCAGGTTGTTTCTAACGCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttc--tgcttaatttgtgctcgcttaccacattttttaggct--tgttgtaac-ttgcatctgtaaggtgctgtacatatactccctccgtccaaaaaa
|||| ||||| ||| ||||||||||  | |||||||||||||||||||||||  ||||||||||||| |||||||| || ||| | || ||||||||||||| |||     | ||||   |  |||  ||||   | |  |  |   |  || | | || |  ||||| || |    |  | |   ||   |   |||       
ACAGAAAGAAAGACCACAAGGATGGTCGTTTCTCCCAGGTTGTTTCTAACGCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaaattcttacaattcgctgtcttatttcttaatgcaatgtgatgctttgacatctcatctttaggactttaga-accaacattcattgtctcg----

upper sequence: LOC_Os07g07709.1 (Oryza sativa), 5'ss of exon 3
lower sequence: PP1S14_433V6.1 (Physcomitrella patens), 5'ss of exon 3
ACAGGAAGAAGGACTACAAGGATGGGAGGTTCTCCCAGGTTGTTTCTAACGCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttc----tgcttaatttg-tgctcgcttaccacatt---ttttaggcttgttgt-aacttgcatctgtaaggtgctgtacatatactccctccgtccaaaaaa
|||| ||||||||| ||||||||||  | | ||||||||||||||| |||||| ||||||||||||| ||||| || |||||| |  ||||||||||||||| || ||        || |||||  |     |||  | |||   |||  || ||  | | ||||  |   |  ||    |  | ||| |      |  |         
ACAGAAAGAAGGACCACAAGGATGGTCGCTACTCCCAGGTTGTTTCCAACGCCTTGGACATGAAGCTGAGGGACGATCTTGAGCGCTTGAAGAAGATCAGgtgtgatttaagacattttatttgacgtctatttatgatattaactttcgggttttgtatgaactctcgctttcaaatgtcaattcatgttggtagtatg---------

upper sequence: LOC_Os07g07709.1 (Oryza sativa), 5'ss of exon 3
lower sequence: PP1S72_222V6.2 (Physcomitrella patens), 5'ss of exon 3
ACAGGAAGAAGGACTACAAGGATGGGAGGTTCTCCCAGGTTGTTTCTAACGCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttg-gttctgcttaatttgtgctcg---cttaccacattttttaggcttgttgtaacttgcatctgtaaggtgctgtacatatactccctccgtccaaaaaa
|||||||||| ||| ||||||| ||  | | ||||||||||||||| |||||| ||||||||||||| ||||| ||||| ||| | ||||| || |||||||| |     ||| |  ||  || |     |||| | |     | | |||| |||| |  |  || | |    |    | || |       | | | |||    
ACAGGAAGAAAGACCACAAGGACGGTCGCTACTCCCAGGTTGTTTCAAACGCCTTGGACATGAAGCTGAGGGACGACCTCGAGCGACTGAAAAAAATCAGgttggtacagtgcatgcttcctgttttgaccttagcgctggaatcaagctttttgtgatatatattt-tgttcttaaattcagaattcaatttcatgcaag---

upper sequence: LOC_Os07g07709.1 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ22352 (Selaginella moellendorffii), 5'ss of exon 3
ACAGGAAGAAGGACTACAAGGATGGGAGGTTCTCCCAGGTTGTTTCTAACGCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttctgcttaatttgtgctcgcttaccacattttttaggcttgttgtaacttgcatctgtaaggtgctgtacatatactccctccgtccaaaaaa
|||||||||||||||||||||| ||||||| ||| ||||||||  | ||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||             ||   ||  |  | |  || || | || ||  ||     | |  | ||| ||  ||     |                        
ACAGGAAGAAGGACTACAAGGACGGGAGGTACTCGCAGGTTGTGGCAAACGCGCTGGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAGgc------------aagccgtttttccctttca-atctcttggggatggatggattgacttctttattgtttgacag-----------------------

upper sequence: LOC_Os07g07709.1 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ25542 (Selaginella moellendorffii), 5'ss of exon 3
ACAGGAAGAAGGACTACAAGGATGGGAGGTTCTCCCAGGTTGTTTCTAACGCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttctgcttaatttgtgctcgcttaccacattttttaggcttgttgtaacttgcatctgtaaggtgctgtacatatactccctccgtccaaaaaa------------
       ||||||||||||||| ||||||| ||| ||||||||  | ||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||    |   |  ||   ||    || |||     ||   |  || |||   |   |    | ||  |||  |    | |   || | ||  | |                  
-------GAAGGACTACAAGGACGGGAGGTACTCGCAGGTTGTGGCAAACGCGCTGGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAGGCA-AGCCgtttttccctttcaatctcttgg-ggatggat--ggattgacttctttattgtttgacaggaaccac-cgtggtcttcgtcactactggggcctgcgcgtccgc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88240311|gb|CI239473.1|CI239473
EST:     GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|88513694|gb|CI441200.1|CI441200
EST:     GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|55409517|gb|CV721893.1|CV721893
EST:     GGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|86257065|gb|CI061828.1|CI061828
EST:     GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|218492840|gb|FG951189.1|FG951189
EST:     GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|88204787|gb|CI204636.1|CI204636
EST:     GCACTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|11171965|gb|AU164049.1|AU164049
EST:     GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|88241434|gb|CI241283.1|CI241283
EST:     GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|88464452|gb|CI544913.1|CI544913
EST:     GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|88431319|gb|CI559887.1|CI559887
EST:     TGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: TGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|88420601|gb|CI562235.1|CI562235
EST:     GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGGTCTCCGTGTCCNCGGTCAGC
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACT-GGGGTCTCCGTGTCCGCGGTCAGC
EST: gi|88442357|gb|CI541564.1|CI541564
EST:     GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGTTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|88850708|gb|CI094973.1|CI094973
EST:     GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|88482517|gb|CI419788.1|CI419788
EST:     GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|87010236|gb|CI279333.1|CI279333
EST:     GCCGTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|38469364|gb|CF953495.1|CF953495
EST:     GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|88478620|gb|CI415891.1|CI415891
EST:     GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGNGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGC
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTG-GTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGC
EST: gi|218479397|gb|FG953009.1|FG953009
EST:     GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|88239430|gb|CI240592.1|CI240592
EST:     GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|86506586|gb|CI149219.1|CI149219
EST:     GCCNTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|86530560|gb|CI170766.1|CI170766
EST:     GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|88429427|gb|CI557159.1|CI557159
EST:     CCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: -CCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|86597876|gb|CI276662.1|CI276662
EST:     GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|86905280|gb|CI283244.1|CI283244
EST:     GCTCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|13896330|gb|AU182666.1|AU182666
EST:     GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCNCCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCNCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|33814194|gb|CF332976.1|CF332976
EST:     GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|33796253|gb|CF323993.1|CF323993
EST:     GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|88224485|gb|CI222665.1|CI222665
EST:     GCTCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|86601220|gb|CI251594.1|CI251594
EST:     GCGCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|88240636|gb|CI239798.1|CI239798
EST:     GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|88977558|gb|CI025294.1|CI025294
EST:     GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|88486664|gb|CI423935.1|CI423935
EST:     GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|86828923|gb|CI280713.1|CI280713
EST:     GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|88416530|gb|CI543431.1|CI543431
EST:     GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|88217472|gb|CI217321.1|CI217321
EST:     GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|88207325|gb|CI207174.1|CI207174
EST:     GCNCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|86842601|gb|CI341756.1|CI341756
EST:     CCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: CCCTGGACATGAAGCTCAGGGATGACCTTGAGA-GGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|88253529|gb|CI352155.1|CI352155
EST:     GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|86508503|gb|CI151136.1|CI151136
EST:     GCGCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|87013073|gb|CI281587.1|CI281587
EST:     GCTCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|88226618|gb|CI226534.1|CI226534
EST:     GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|88956058|gb|CI092346.1|CI092346
EST:     GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|86428697|gb|CI075378.1|CI075378
EST:     GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|86531456|gb|CI171662.1|CI171662
EST:     GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|87007476|gb|CI280940.1|CI280940
EST:     GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|89199159|gb|CI255425.1|CI255425
EST:     CCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: -CCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
EST: gi|88209779|gb|CI209628.1|CI209628
EST:     GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAG                         GAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA
genomic: GCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 73 (downstream exon)
Score: 99

ACAGGAAGAAGGACTACAAGGATGGGAGGTTCTCCCAGGTTGTTTCTAACGCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttct ... tgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCACACCAAGACTACTGGCAGGAGGGGAAAGACTGTCGGTGTCTCCAAGAAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAGGAAGAAGGACTACAAGGATGGGAGGTTCTCCCAGGTTGTTTCTAACGCCCTGGACATGAAGCTCAGGGATGACCTTGAGAGGCTGAAGAAGATCAGgtttggttctgcttaatttgtgctcgcttaccacattttttaggcttgttgtaacttgcatctgtaaggtgctgtacatatactccctccgtccaaaaaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctccg