Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTATCCCAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctcttcccgtgtgattatatattgttcaataattaccttacatttgtaaacaaataaagatcttcgtttttgaataatggaaaacttatttaacatcatactattcatgcag

Basic information

species Oryza sativa
transcript LOC_Os07g07240.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g07240.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G074479_T03 (Zea mays), 5'ss of exon 3
GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTATCCCAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctcttcccgtgtgattatatattgttcaa-taattaccttacatttgtaaacaaataaagatc---ttcgtttttgaataatggaaaacttatttaacatcatactattcatgcag
||||||||||||||||||||||||||||||||||||| || |||||||| || |||||||| ||||| ||||||||||| || |||||||||||  | |||| || |      || | ||| | |  | || ||| |   | | |   || || || |||    ||  |||||| |      ||| |  | ||||||  || |||| ||||||
GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCACCAACTGTTCGATTTGTCTCTAGGATGTTTCATCCAAATAgtaatatttctttccttccccacattttttgctgacctcatcaccctctgtctttgtgcacattaacatcaatctcaattttgattttgtagaaagtggtgtaacattttattattaatgcag

upper sequence: LOC_Os07g07240.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G022206_T01 (Zea mays), 5'ss of exon 1
----------GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTATCCCAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctcttcccgtgtgattatatattgttcaataattaccttacat-ttgtaaacaaataaagatcttcgttt--ttgaataatggaaaacttatttaacatcatactattcatgcag
          ||||||||||||||||||||||||||||||||||||| || |||||||| || ||||||||||| || ||||||||||| || ||||| ||||| |||||| ||    |  || |   |  | |  | || ||| |   | || |   ||  | || |||    |    ||  ||  |  |||| || | |||||   || |||||||||||
ACATCTATAGGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCACCAACTGTTCGGTTCGTCTCTAGGATGTTTCATCCAAACAgtaatctctctccctacct--tttttgctgatcccctcatcaccctctgtcttttgtgcacgttaacatcaatatcagatttgattgtcaaaaa-ttgtgtaacaatttattattcatgcag

upper sequence: LOC_Os07g07240.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G074479_T06 (Zea mays), 5'ss of exon 1
----------GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTATCCCAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctcttcccgtgtgattatatattgttcaa-taattaccttacatttgtaaacaaataaagatc---ttcgtttttgaataatggaaaacttatttaacatcatactattcatgcag
          ||||||||||||||||||||||||||||||||||||| || |||||||| || |||||||| ||||| ||||||||||| || |||||||||||  | |||| || |      || | ||| | |  | || ||| |   | | |   || || || |||    ||  |||||| |      ||| |  | ||||||  || |||| ||||||
ACATATGTAGGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCACCAACTGTTCGATTTGTCTCTAGGATGTTTCATCCAAATAgtaatatttctttccttccccacattttttgctgacctcatcaccctctgtctttgtgcacattaacatcaatctcaattttgattttgtagaaagtggtgtaacattttattattaatgcag

upper sequence: LOC_Os07g07240.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G022206_T02 (Zea mays), 5'ss of exon 3
GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTATCCCAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctcttcccgtgtgattatatattgttcaataattaccttacat-ttgtaaacaaataaagatcttcgttt--ttgaataatggaaaacttatttaacatcatactattcatgcag
||||||||||||||||||||||||||||||||||||| || |||||||| || ||||||||||| || ||||||||||| || ||||| ||||| |||||| ||    |  || |   |  | |  | || ||| |   | || |   ||  | || |||    |    ||  ||  |  |||| || | |||||   || |||||||||||
GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCACCAACTGTTCGGTTCGTCTCTAGGATGTTTCATCCAAACAgtaatctctctccctacct--tttttgctgatcccctcatcaccctctgtcttttgtgcacgttaacatcaatatcagatttgattgtcaaaaa-ttgtgtaacaatttattattcatgcag

upper sequence: LOC_Os07g07240.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G074479_T04 (Zea mays), 5'ss of exon 3
GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTATCCCAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctcttcccgtgtgattatatattgttcaa-taattaccttacatttgtaaacaaataaagatc---ttcgtttttgaataatggaaaacttatttaacatcatactattcatgcag--------------------------------------
||||||||||||||||||||||||||||||||||||| || |||||||| || |||||||| ||||| ||||||||||| || |||||||||||  | |||| || |      || | ||| | |  | || ||| |   | | |   || || || |||    ||  |||||| |      ||| |  | ||||||  || |||| ||||||                                      
GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTACCCAAACAAGCCACCAACTGTTCGATTTGTCTCTAGGATGTTTCATCCAAATAgtaatatttctttccttccccacattttttgctgacctcatcaccctctgtctttgtgcacattaacatcaatctcaattttgattttgtagaaagtggtgtaacattttattattaatgcagtatatgctgatggaagcatctgtttggatatcctacag

upper sequence: LOC_Os07g07240.1 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ21576 (Selaginella moellendorffii), 5'ss of exon 3
GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTATCCCAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctcttcccgtgtgattatatattgttcaataattaccttacatttgtaaacaaataaagatcttcgtttttgaataatggaaaacttatttaacatcatactattcatgcag
| |||||||||||||| || ||||| || || || ||||||||||| ||||| | ||| |||||||| || | ||||||||| || || |||||| ||  ||       |  | ||| ||  | |     |  |  |                                                                        
GTACGTTCAAGCTTACGTTACAGTTCACGGAGGACTATCCCAACAAACCGCCAAATGTCCGGTTTGTGTCGAAGATGTTCCATCCCAACAgtaagttcgtttattcgtagtgtctatcttccttacgcgctctcgcag-----------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86595123|gb|CI260362.1|CI260362
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|58589089|gb|CF987397.1|CF987397
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|87030405|gb|CI252682.1|CI252682
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|88961954|gb|CI097107.1|CI097107
EST:     GATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTGGGATATTCTACAGAACCAGTGGAGCC
genomic: GATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|86529619|gb|CI169825.1|CI169825
EST:     TCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: TCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|88370680|gb|CI592446.1|CI592446
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACA
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACA
EST: gi|33829483|gb|CF340565.1|CF340565
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|86512672|gb|CI155305.1|CI155305
EST:     GTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: GTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|87018548|gb|CI252302.1|CI252302
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|58589326|gb|CF987634.1|CF987634
EST:     AACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGAGTGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: AACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGA-TGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|33815914|gb|CF333803.1|CF333803
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTTTACAGAACCAGTGGAGC
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAAT-Agtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGC
EST: gi|396941349|gb|HO188558.1|HO188558
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|86855364|gb|CI265290.1|CI265290
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|88205838|gb|CI205687.1|CI205687
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|86257132|gb|CI061895.1|CI061895
EST:     GTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: GTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|58602468|gb|CK012996.1|CK012996
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|58594410|gb|CF992718.1|CF992718
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|86601347|gb|CI251721.1|CI251721
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|88962748|gb|CI023848.1|CI023848
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|58597267|gb|CK007795.1|CK007795
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|88390727|gb|CI610953.1|CI610953
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|88244873|gb|CI242724.1|CI242724
EST:     CCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|86592637|gb|CI253318.1|CI253318
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|15008457|gb|AU222845.1|AU222845
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|86599452|gb|CI251410.1|CI251410
EST:     CAACAAGCCGCCGACTGTCCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|8955795|gb|BE229600.1|BE229600
EST:     GGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: GGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|33661350|gb|CF292317.1|CF292317
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|88216283|gb|CI216132.1|CI216132
EST:     GCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: GCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|88826116|gb|CI776681.1|CI776681
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACC
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACC
EST: gi|86870896|gb|CI326722.1|CI326722
EST:     TGTTCCACCCAAATA                         TTTATCCAGAT-GAAGCATCTGCTTGGATATTGTACAGAACCAGTGGAGCC
genomic: TGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|88727870|gb|CI749382.1|CI749382
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAG
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAG
EST: gi|87031523|gb|CI263896.1|CI263896
EST:     CCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|88364559|gb|CI612374.1|CI612374
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|218486911|gb|FG967738.1|FG967738
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|87011703|gb|CI281405.1|CI281405
EST:     ACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: ACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|88571683|gb|CI663056.1|CI663056
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|3767492|gb|AU031602.1|AU031602
EST:     ACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCCAAAATA                         TTTATNCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGC
genomic: ACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCA-CCC-AAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGC
EST: gi|88210425|gb|CI210274.1|CI210274
EST:     GTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: GTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|27577517|gb|CB000212.1|CB000212
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|88721800|gb|CI745099.1|CI745099
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAG
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAG
EST: gi|88444098|gb|CI594471.1|CI594471
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|88440712|gb|CI693273.1|CI693273
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|33823815|gb|CF337714.1|CF337714
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|218500131|gb|FG955693.1|FG955693
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|87023876|gb|CI288229.1|CI288229
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|55409265|gb|CV721641.1|CV721641
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCTTTTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|88850544|gb|CI093225.1|CI093225
EST:     AGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: AGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|88902902|gb|CI088440.1|CI088440
EST:     TCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: TCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|218478273|gb|FG948223.1|FG948223
EST:     CTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|86855761|gb|CI269088.1|CI269088
EST:     GTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: GTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|163921046|gb|EG714082.1|EG714082
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTCATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|7608720|gb|AU090501.1|AU090501
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|86524958|gb|CI165164.1|CI165164
EST:     CCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
EST: gi|33661144|gb|CF292111.1|CF292111
EST:     CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATA                         TTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC
genomic: CAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 26 (downstream exon)
Score: 100

GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTATCCCAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctc ... attcatgcagTTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCCCTATATATGATGTTGCTGCCATATTGACTTCAATTCAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTATCCCAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTTCCACCCAAATAgtaagctctcttcccgtgtgattatatattgttcaataattaccttacatttgtaaacaaataaagatcttcgtttttgaataatggaaaacttatttaacatcatactattcatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG