Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAAGAACAAATGGCCTACGTTTTGTTGAAAGTTGGCCGCTTTGAGGAGGCTGAGAAAACATATAGGTCCATGCTTTTTATGAATCCTGATAACTACAAgtgagacacttgtgctgcttttttttcctcacttaaatttctttgctttggtcttctggtaaactctgaaaacagtgaatatgggttttgaatttcaaca...

Basic information

species Oryza sativa
transcript LOC_Os07g07180.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g07180.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G047093_T01 (Zea mays), 5'ss of exon 8
TCAAAGAACAAATGGCCTACGTTTTGTTGAAAGTTGGCCGCTTTGAGGAGGCTGAGAAAACATATAGGTCCATGCTTTTTATGAATCCTGATAACTACAAgtgagacacttgtgctgcttttttttcctcacttaaatttctttgctttggtcttctggtaaactctgaaaacagtgaatatgggttttgaatttcaaca
|||||||||||||||| | ||| ||||| ||| ||||||||||||| ||  ||||||  | ||| || ||| |||||||||||||||||||||||||||||||||  ||| |||     |||||     ||| |     || ||  ||| |       |||||     |  |   |  | ||  |     |  |      
TCAAAGAACAAATGGCATCCGTCTTGTTCAAACTTGGCCGCTTTGATGAATCTGAGAGCATATACAGATCCCTGCTTTTTATGAATCCTGATAACTACAAgtgagttactcgtgtcctctttttacttgcacatgttcatccttatttttgctccactgtaaatgggcatgagtcttgacatttgacacaacctgtgctg